Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OHM05_RS09400 Genome accession   NZ_CP107272
Coordinates   1790290..1790718 (+) Length   142 a.a.
NCBI ID   WP_187151664.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1130991     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785290..1795718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS09365 (OHM05_09365) - 1785450..1786070 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  OHM05_RS09370 (OHM05_09370) - 1786269..1786645 (-) 377 Protein_1806 transposase -
  OHM05_RS09375 (OHM05_09375) - 1786954..1787079 (-) 126 Protein_1807 IS110 family transposase -
  OHM05_RS09380 (OHM05_09380) - 1787615..1788010 (+) 396 Protein_1808 pilin -
  OHM05_RS09385 (OHM05_09385) - 1787996..1788346 (+) 351 Protein_1809 pilin -
  OHM05_RS09390 (OHM05_09390) - 1788761..1789210 (+) 450 Protein_1810 pilin -
  OHM05_RS09395 (OHM05_09395) - 1789748..1790194 (+) 447 Protein_1811 pilin -
  OHM05_RS09400 (OHM05_09400) pilE 1790290..1790718 (+) 429 WP_187151664.1 pilin Machinery gene
  OHM05_RS09405 (OHM05_09405) lpxC 1791212..1792135 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OHM05_RS09410 (OHM05_09410) pilE 1792241..1792654 (+) 414 WP_047918892.1 pilin Machinery gene
  OHM05_RS09415 (OHM05_09415) pilE 1793634..1794146 (+) 513 WP_263946601.1 pilin Machinery gene
  OHM05_RS11905 - 1794687..1794851 (+) 165 WP_154586584.1 hypothetical protein -
  OHM05_RS09420 (OHM05_09420) - 1794779..1795528 (+) 750 Protein_1817 opacity family porin -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15303.95 Da        Isoelectric Point: 6.2355

>NTDB_id=739093 OHM05_RS09400 WP_187151664.1 1790290..1790718(+) (pilE) [Neisseria gonorrhoeae strain 1130991]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNTSAGVASSPTDIKGKYVKSVTVAKGVVTAEMASTGVNKEI
QGKRLSLWAKRQDGSVKWFCGQPVQRADNADNDAVTAAAAGKDKEIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=739093 OHM05_RS09400 WP_187151664.1 1790290..1790718(+) (pilE) [Neisseria gonorrhoeae strain 1130991]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGC
CGACAACGCCGACAACGACGCCGTCACCGCCGCCGCCGCCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAA
CCTGCCGTGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.028

100

0.725
  pilE Neisseria gonorrhoeae MS11

70.423

100

0.704