Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OHM05_RS09415 Genome accession   NZ_CP107272
Coordinates   1793634..1794146 (+) Length   170 a.a.
NCBI ID   WP_263946601.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1130991     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788634..1799146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS09390 (OHM05_09390) - 1788761..1789210 (+) 450 Protein_1810 pilin -
  OHM05_RS09395 (OHM05_09395) - 1789748..1790194 (+) 447 Protein_1811 pilin -
  OHM05_RS09400 (OHM05_09400) pilE 1790290..1790718 (+) 429 WP_187151664.1 pilin Machinery gene
  OHM05_RS09405 (OHM05_09405) lpxC 1791212..1792135 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OHM05_RS09410 (OHM05_09410) pilE 1792241..1792654 (+) 414 WP_047918892.1 pilin Machinery gene
  OHM05_RS09415 (OHM05_09415) pilE 1793634..1794146 (+) 513 WP_263946601.1 pilin Machinery gene
  OHM05_RS11905 - 1794687..1794851 (+) 165 WP_154586584.1 hypothetical protein -
  OHM05_RS09420 (OHM05_09420) - 1794779..1795528 (+) 750 Protein_1817 opacity family porin -
  OHM05_RS09425 (OHM05_09425) pilA 1795796..1797049 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OHM05_RS09430 (OHM05_09430) msrAB 1797195..1798763 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18423.87 Da        Isoelectric Point: 7.1343

>NTDB_id=739095 OHM05_RS09415 WP_263946601.1 1793634..1794146(+) (pilE) [Neisseria gonorrhoeae strain 1130991]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTGYYLNHGEWPKDNTSAGVASPASNI
KGKYVQKVEVNNGVVTATMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVKRNANAKDADDVTDDAGKDKEIETKHLP
STCRDEPTAE

Nucleotide


Download         Length: 513 bp        

>NTDB_id=739095 OHM05_RS09415 WP_263946601.1 1793634..1794146(+) (pilE) [Neisseria gonorrhoeae strain 1130991]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGGGTATTACCTGAATCACGGCGAATGGCCCAAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCTCCAACATC
AAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGA
AATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGC
GCAACGCCAACGCCAAAGACGCCGACGACGTTACCGACGACGCCGGCAAAGACAAAGAAATCGAAACCAAGCACCTGCCG
TCAACCTGCCGCGATGAACCAACTGCCGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

82.84

99.412

0.824
  pilE Neisseria gonorrhoeae MS11

78.916

97.647

0.771