Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | OHM05_RS01085 | Genome accession | NZ_CP107272 |
| Coordinates | 220934..221383 (+) | Length | 149 a.a. |
| NCBI ID | WP_002214937.1 | Uniprot ID | A0AA44U8B7 |
| Organism | Neisseria gonorrhoeae strain 1130991 | ||
| Function | DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 221632..252673 | 220934..221383 | flank | 249 |
Gene organization within MGE regions
Location: 220934..252673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHM05_RS01085 (OHM05_01085) | comP | 220934..221383 (+) | 450 | WP_002214937.1 | type IV pilin protein | Machinery gene |
| OHM05_RS01090 (OHM05_01090) | - | 221760..221906 (-) | 147 | WP_003691757.1 | hypothetical protein | - |
| OHM05_RS01095 (OHM05_01095) | - | 222293..222883 (+) | 591 | WP_080229150.1 | DNA cytosine methyltransferase | - |
| OHM05_RS01100 (OHM05_01100) | - | 222880..223251 (+) | 372 | WP_012503918.1 | DNA cytosine methyltransferase | - |
| OHM05_RS01105 (OHM05_01105) | - | 223265..224122 (+) | 858 | WP_012503917.1 | ATP-binding protein | - |
| OHM05_RS01110 (OHM05_01110) | - | 224312..224908 (+) | 597 | WP_012503916.1 | TIGR02391 family protein | - |
| OHM05_RS01115 (OHM05_01115) | - | 224914..225336 (+) | 423 | WP_003691751.1 | very short patch repair endonuclease | - |
| OHM05_RS01120 (OHM05_01120) | - | 225475..226805 (+) | 1331 | Protein_214 | replication initiation factor domain-containing protein | - |
| OHM05_RS01125 (OHM05_01125) | - | 226850..227140 (+) | 291 | WP_002216601.1 | hypothetical protein | - |
| OHM05_RS01130 (OHM05_01130) | - | 227145..227342 (+) | 198 | WP_003689600.1 | hypothetical protein | - |
| OHM05_RS01135 (OHM05_01135) | - | 227416..227634 (+) | 219 | WP_003691584.1 | major capsid protein | - |
| OHM05_RS01140 (OHM05_01140) | - | 227641..227919 (+) | 279 | WP_003691583.1 | hypothetical protein | - |
| OHM05_RS01145 (OHM05_01145) | - | 228047..228364 (+) | 318 | WP_003689167.1 | DUF1132 family protein | - |
| OHM05_RS01150 (OHM05_01150) | - | 228306..229874 (+) | 1569 | WP_162894293.1 | IgG-binding virulence factor TspB family protein | - |
| OHM05_RS01155 (OHM05_01155) | - | 229875..230165 (+) | 291 | WP_003689734.1 | DUF2523 domain-containing protein | - |
| OHM05_RS01160 (OHM05_01160) | - | 230175..231260 (+) | 1086 | WP_003691565.1 | zonular occludens toxin domain-containing protein | - |
| OHM05_RS01165 (OHM05_01165) | - | 231381..231740 (+) | 360 | WP_003689732.1 | hypothetical protein | - |
| OHM05_RS01170 (OHM05_01170) | - | 232252..233214 (+) | 963 | WP_048596855.1 | IS110 family transposase | - |
| OHM05_RS01175 (OHM05_01175) | - | 233543..233923 (-) | 381 | WP_017147222.1 | RusA family crossover junction endodeoxyribonuclease | - |
| OHM05_RS01180 (OHM05_01180) | - | 233914..234195 (-) | 282 | WP_003689109.1 | hypothetical protein | - |
| OHM05_RS01185 (OHM05_01185) | - | 234224..234373 (-) | 150 | WP_003689110.1 | hypothetical protein | - |
| OHM05_RS01190 (OHM05_01190) | - | 234550..235044 (-) | 495 | WP_041421248.1 | DUF3310 domain-containing protein | - |
| OHM05_RS01195 (OHM05_01195) | - | 235083..235289 (-) | 207 | WP_044271496.1 | hypothetical protein | - |
| OHM05_RS01200 (OHM05_01200) | - | 235359..236141 (-) | 783 | WP_025456432.1 | ATP-binding protein | - |
| OHM05_RS01205 (OHM05_01205) | - | 236156..237166 (-) | 1011 | WP_050153770.1 | helix-turn-helix domain-containing protein | - |
| OHM05_RS01210 (OHM05_01210) | - | 237163..237390 (-) | 228 | WP_003691442.1 | helix-turn-helix domain-containing protein | - |
| OHM05_RS01215 (OHM05_01215) | - | 237771..238487 (+) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| OHM05_RS01220 (OHM05_01220) | - | 238647..239186 (+) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| OHM05_RS01225 (OHM05_01225) | - | 239187..239546 (+) | 360 | WP_003691733.1 | hypothetical protein | - |
| OHM05_RS01230 (OHM05_01230) | - | 239563..239781 (-) | 219 | WP_003691731.1 | hypothetical protein | - |
| OHM05_RS01235 (OHM05_01235) | - | 240265..240465 (+) | 201 | WP_047917349.1 | hypothetical protein | - |
| OHM05_RS01240 (OHM05_01240) | - | 240498..240974 (+) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| OHM05_RS01245 (OHM05_01245) | - | 240971..241258 (+) | 288 | WP_047926276.1 | hypothetical protein | - |
| OHM05_RS01250 (OHM05_01250) | - | 241400..241732 (+) | 333 | WP_050155386.1 | hypothetical protein | - |
| OHM05_RS01255 (OHM05_01255) | - | 241885..242160 (+) | 276 | WP_082295533.1 | NGO1622 family putative holin | - |
| OHM05_RS01260 (OHM05_01260) | - | 242157..242318 (+) | 162 | WP_003693867.1 | hypothetical protein | - |
| OHM05_RS01265 (OHM05_01265) | - | 242387..243073 (+) | 687 | WP_033910330.1 | phage replication initiation protein, NGO0469 family | - |
| OHM05_RS01270 (OHM05_01270) | - | 243213..243395 (+) | 183 | WP_003691535.1 | hypothetical protein | - |
| OHM05_RS01275 (OHM05_01275) | - | 243392..243883 (+) | 492 | WP_047916888.1 | siphovirus Gp157 family protein | - |
| OHM05_RS01280 (OHM05_01280) | - | 243935..244150 (+) | 216 | WP_003691538.1 | hypothetical protein | - |
| OHM05_RS01285 (OHM05_01285) | - | 244261..245244 (+) | 984 | WP_047952517.1 | hypothetical protein | - |
| OHM05_RS01290 (OHM05_01290) | - | 245241..245471 (+) | 231 | WP_003695893.1 | hypothetical protein | - |
| OHM05_RS01295 (OHM05_01295) | - | 245443..246390 (+) | 948 | WP_012503904.1 | hypothetical protein | - |
| OHM05_RS01300 (OHM05_01300) | - | 246498..246764 (+) | 267 | WP_003689557.1 | pyocin activator PrtN family protein | - |
| OHM05_RS01305 (OHM05_01305) | - | 246814..247968 (-) | 1155 | WP_003697468.1 | tyrosine-type recombinase/integrase | - |
| OHM05_RS01310 (OHM05_01310) | dusA | 248088..249104 (+) | 1017 | WP_003689555.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| OHM05_RS01315 (OHM05_01315) | gluQRS | 249174..250061 (-) | 888 | WP_003689554.1 | tRNA glutamyl-Q(34) synthetase GluQRS | - |
| OHM05_RS01320 (OHM05_01320) | - | 250078..250368 (-) | 291 | WP_003689553.1 | hypothetical protein | - |
| OHM05_RS01325 (OHM05_01325) | - | 250373..250507 (-) | 135 | WP_012503902.1 | hypothetical protein | - |
| OHM05_RS01330 (OHM05_01330) | tal | 250519..251574 (-) | 1056 | WP_003689551.1 | transaldolase | - |
| OHM05_RS01335 (OHM05_01335) | - | 251671..252645 (+) | 975 | WP_003689550.1 | SIS domain-containing protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16834.81 Da Isoelectric Point: 9.7951
>NTDB_id=739061 OHM05_RS01085 WP_002214937.1 220934..221383(+) (comP) [Neisseria gonorrhoeae strain 1130991]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK
Nucleotide
Download Length: 450 bp
>NTDB_id=739061 OHM05_RS01085 WP_002214937.1 220934..221383(+) (comP) [Neisseria gonorrhoeae strain 1130991]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comP | Neisseria meningitidis 8013 |
99.329 |
100 |
0.993 |
| comP | Neisseria subflava NJ9703 |
49.66 |
98.658 |
0.49 |