Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | N5938_RS10180 | Genome accession | NZ_CP107257 |
| Coordinates | 2184532..2185404 (-) | Length | 290 a.a. |
| NCBI ID | WP_003116251.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 2019CK-00034 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2179532..2190404
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5938_RS10135 (N5938_10135) | - | 2180393..2180563 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| N5938_RS10140 (N5938_10140) | - | 2180589..2181038 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| N5938_RS10145 (N5938_10145) | - | 2181035..2181664 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| N5938_RS10150 (N5938_10150) | - | 2181797..2182222 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| N5938_RS10155 (N5938_10155) | - | 2182219..2182689 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| N5938_RS10160 (N5938_10160) | - | 2182686..2183375 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| N5938_RS10165 (N5938_10165) | - | 2183481..2183690 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| N5938_RS10170 (N5938_10170) | yacG | 2183727..2183927 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| N5938_RS10175 (N5938_10175) | coaE | 2183924..2184535 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| N5938_RS10180 (N5938_10180) | pilD | 2184532..2185404 (-) | 873 | WP_003116251.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| N5938_RS10185 (N5938_10185) | - | 2185407..2186625 (-) | 1219 | Protein_2000 | type II secretion system F family protein | - |
| N5938_RS10190 (N5938_10190) | pilB | 2186629..2188329 (-) | 1701 | WP_263901898.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| N5938_RS10195 (N5938_10195) | - | 2188560..2189024 (+) | 465 | WP_023129290.1 | pilin | - |
| N5938_RS10200 (N5938_10200) | - | 2189339..2189620 (+) | 282 | WP_263901899.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31871.89 Da Isoelectric Point: 7.3454
>NTDB_id=738814 N5938_RS10180 WP_003116251.1 2184532..2185404(-) (pilD) [Pseudomonas aeruginosa strain 2019CK-00034]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=738814 N5938_RS10180 WP_003116251.1 2184532..2185404(-) (pilD) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |