Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QBL01_RS00710 Genome accession   NZ_CP121769
Coordinates   142119..144200 (-) Length   693 a.a.
NCBI ID   WP_075630899.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137119..149200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS00690 (QBL01_00690) rbsK 137624..138547 (+) 924 WP_035497091.1 ribokinase -
  QBL01_RS00695 (QBL01_00695) glnA 138867..140294 (+) 1428 WP_075593066.1 type I glutamate--ammonia ligase -
  QBL01_RS00700 (QBL01_00700) - 140361..141328 (-) 968 Protein_137 IS256 family transposase -
  QBL01_RS00705 (QBL01_00705) - 141434..141835 (-) 402 WP_021112881.1 YgiW/YdeI family stress tolerance OB fold protein -
  QBL01_RS00710 (QBL01_00710) recG 142119..144200 (-) 2082 WP_075630899.1 ATP-dependent DNA helicase RecG Machinery gene
  QBL01_RS00715 (QBL01_00715) - 144313..145518 (-) 1206 WP_035522817.1 cupin domain-containing protein -
  QBL01_RS00720 (QBL01_00720) - 145619..146383 (-) 765 WP_075630900.1 BPL-N domain-containing protein -
  QBL01_RS00725 (QBL01_00725) - 146467..147033 (+) 567 WP_044009283.1 biotin transporter BioY -
  QBL01_RS00730 (QBL01_00730) - 147164..147973 (-) 810 WP_160433220.1 Cof-type HAD-IIB family hydrolase -
  QBL01_RS00735 (QBL01_00735) - 148097..148774 (+) 678 WP_279378537.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77303.44 Da        Isoelectric Point: 8.4458

>NTDB_id=738790 QBL01_RS00710 WP_075630899.1 142119..144200(-) (recG) [Glaesserella parasuis strain Z44]
MSQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTTEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQHALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQNYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=738790 QBL01_RS00710 WP_075630899.1 142119..144200(-) (recG) [Glaesserella parasuis strain Z44]
ATGAGCCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGTATTAATAATGTGCAAGATCTGCTGTTCCATTTGCCTATGCGCTATGAAGACCGTACTCGGATCACGCCGATTG
CGGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTGCAATTTGGTCGTCGTCCGATT
TTAAGTACCACAATTTCTGACGGCACAAGCAAAATTACCCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCAACTGGTGTAAGAGTGAAAGCCTTTGGCGAGATTAAACGTGGTCGCTTTATGGCAGAAATTCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCTGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTGCAGTTGTTACATCGACCGCCACCGAGTGTGTCGTCCGAATTGTTAG
ATAAAGGCGAACACCCTGCACAAAAACGGCTGATTTTTGAAGAGCTGTTGGCTCATAATTTGGCGATGCAACAGGTGCGA
ATGGGGGTGCAACAACATTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTAGCCACTTTGCCGTT
TCAACCGACCAACGCTCAAAGCCGTGTGACTACGGAGATTGAACAGGATTTGGCAAAACCTTTTCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGTAAAACTCTTGTGGCTGCGTTAGCGGCACTGTTGGCGATTGATAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCGAAGGGCGATGTCTATCCGCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTGGCGATGACCGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCTG
GACGAACACCGATCACGACGGTGGCGATTTCGGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTGTTAGAAGCACAAGCGGCGGCAGCGAT
AGCCGAAGATTTGCAACATGCTTTGCCAGATTTGCGGATTGGGTTGGTTCACGGGCGAATGAAGCCACAGGAAAAACAGG
CAATTATGGCGGAATTTAAGGCGGCAAATATTGATTTGTTGGTGGCAACAACAGTGATCGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGATTGGCACAGTTGCACCAACTGCGTGGGCGTGTTGGACG
TGGAGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCATCTAAACGGTTACAGGTACTGA
GAGATAGCCAAGACGGTTTTGTGATTGCTGAAAAAGATTTGGAAATTCGTGGCCCGGGTGAAGTGTTAGGCACAAAACAG
ACAGGTATGGCGGAGTTCAAAATTGCGAATTTAATGCGAGATCGCAAGATGATCCCATTGGTGCAGAACTACGCCAAACA
GCTAACGTTAAAATATCCTGATACGGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

DEAD/DEAH box helicase (DEAD)

(292-407)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.185

97.403

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.634

94.661

0.375
  recG/mmsA Streptococcus pneumoniae R36A

39.634

94.661

0.375