Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QBL01_RS00500 Genome accession   NZ_CP121769
Coordinates   96355..96996 (+) Length   213 a.a.
NCBI ID   WP_021111957.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 91355..101996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS00475 (QBL01_00475) - 92129..93106 (-) 978 WP_160448513.1 DUF1852 domain-containing protein -
  QBL01_RS00480 (QBL01_00480) ffh 93412..94794 (+) 1383 WP_010786427.1 signal recognition particle protein -
  QBL01_RS00490 (QBL01_00490) - 95069..95227 (+) 159 WP_021117790.1 transposase family protein -
  QBL01_RS00495 (QBL01_00495) - 95205..96026 (+) 822 WP_279378534.1 ISAs1 family transposase -
  QBL01_RS00500 (QBL01_00500) sxy/tfoX 96355..96996 (+) 642 WP_021111957.1 TfoX/Sxy family DNA transformation protein Regulator
  QBL01_RS00505 (QBL01_00505) fumC 97144..98538 (+) 1395 WP_279378535.1 class II fumarate hydratase -
  QBL01_RS00510 (QBL01_00510) - 98720..99898 (+) 1179 WP_043894733.1 ATP-grasp domain-containing protein -
  QBL01_RS00515 (QBL01_00515) - 99953..100711 (+) 759 WP_021111960.1 alpha/beta hydrolase-fold protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24775.77 Da        Isoelectric Point: 9.7347

>NTDB_id=738786 QBL01_RS00500 WP_021111957.1 96355..96996(+) (sxy/tfoX) [Glaesserella parasuis strain Z44]
MKYIDVKTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKS
FYLIPTEILYDLKPISHWITNGIQEIINTKHTQYIKKKRCIRTLPNMTIQLERTLKKLGINSIDELIDRGEVDIFVNLLK
MGIDADQAILFRLYGAINRQYIYTISDKTKQDLLNDANHALYEAGLRKRFNVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=738786 QBL01_RS00500 WP_021111957.1 96355..96996(+) (sxy/tfoX) [Glaesserella parasuis strain Z44]
ATGAAATACATTGATGTAAAAACACAACACATTAGAAATTTGCTTTATCCTATAATTGGAGAAACTCAAGCAAAAACATA
TTTTTCCTACTATGGAATAATGAAAGATGGAGCTCTGTTTGCTCTATATAAAAATAGTAAATTCTATCTTCATATCTCAG
GAAACTGTCTACATGAAGTACTAACTAATCCCAATATATCCCAACTGTCCGACTCTAAATATGGTATCAATTCTAAATCT
TTCTATTTGATTCCAACAGAAATTTTATATGATTTAAAACCCATCTCCCATTGGATAACCAATGGTATTCAAGAGATTAT
AAATACAAAACACACCCAATATATAAAAAAGAAAAGATGTATCCGTACCTTACCTAATATGACTATTCAACTAGAAAGGA
CATTGAAAAAGTTAGGTATCAACTCCATCGATGAACTGATTGATAGAGGTGAAGTGGATATATTCGTTAATCTTCTTAAG
ATGGGTATAGATGCTGATCAAGCTATTTTGTTCCGTCTTTATGGAGCAATTAATCGACAATATATTTATACTATCTCTGA
TAAGACTAAGCAGGATCTACTTAATGATGCAAATCATGCTCTATATGAGGCTGGCTTACGTAAGCGCTTTAATGTTAAAT
AA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(120-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

41.429

98.592

0.408
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

39.234

98.122

0.385