Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   N5898_RS03715 Genome accession   NZ_CP107256
Coordinates   733751..734929 (-) Length   392 a.a.
NCBI ID   WP_002869197.1    Uniprot ID   Q7WYI6
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728751..739929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS03685 (N5898_03685) - 729292..729633 (+) 342 WP_002869194.1 hypothetical protein -
  N5898_RS03690 (N5898_03690) flgM 729696..729893 (+) 198 WP_002869195.1 flagellar biosynthesis anti-sigma factor FlgM -
  N5898_RS03695 (N5898_03695) - 729936..730370 (+) 435 WP_002779263.1 flagellar protein FlgN -
  N5898_RS03700 (N5898_03700) flgK 730380..732206 (+) 1827 WP_002869196.1 flagellar hook-associated protein FlgK -
  N5898_RS03705 (N5898_03705) - 732223..732986 (+) 764 Protein_717 TIGR02757 family protein -
  N5898_RS03710 (N5898_03710) - 732990..733754 (+) 765 WP_002855301.1 TSUP family transporter -
  N5898_RS03715 (N5898_03715) ctsF 733751..734929 (-) 1179 WP_002869197.1 type II secretion system F family protein Machinery gene
  N5898_RS03720 (N5898_03720) ctsE 734926..736485 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  N5898_RS03725 (N5898_03725) ctsX 736475..737062 (-) 588 WP_002851370.1 membrane protein Machinery gene
  N5898_RS03730 (N5898_03730) ctsP 737066..737674 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  N5898_RS03735 (N5898_03735) ctsD 737667..739079 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N5898_RS03740 (N5898_03740) ctsR 739057..739368 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45698.29 Da        Isoelectric Point: 9.0938

>NTDB_id=738782 N5898_RS03715 WP_002869197.1 733751..734929(-) (ctsF) [Campylobacter jejuni strain PNUSAC004956]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=738782 N5898_RS03715 WP_002869197.1 733751..734929(-) (ctsF) [Campylobacter jejuni strain PNUSAC004956]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGTGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

100

100

1