Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N5898_RS03740 Genome accession   NZ_CP107256
Coordinates   739057..739368 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 734057..744368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS03720 (N5898_03720) ctsE 734926..736485 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  N5898_RS03725 (N5898_03725) ctsX 736475..737062 (-) 588 WP_002851370.1 membrane protein Machinery gene
  N5898_RS03730 (N5898_03730) ctsP 737066..737674 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  N5898_RS03735 (N5898_03735) ctsD 737667..739079 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N5898_RS03740 (N5898_03740) ctsR 739057..739368 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  N5898_RS03745 (N5898_03745) nifJ 739392..742952 (-) 3561 WP_002869199.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N5898_RS03750 (N5898_03750) - 743045..743686 (-) 642 WP_002869201.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=738787 N5898_RS03740 WP_002855438.1 739057..739368(-) (ctsR) [Campylobacter jejuni strain PNUSAC004956]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=738787 N5898_RS03740 WP_002855438.1 739057..739368(-) (ctsR) [Campylobacter jejuni strain PNUSAC004956]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1