Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   N5898_RS03125 Genome accession   NZ_CP107256
Coordinates   611785..612300 (-) Length   171 a.a.
NCBI ID   WP_002869328.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606785..617300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS03110 (N5898_03110) - 606884..608614 (-) 1731 WP_011812789.1 flagellin A -
  N5898_RS03115 (N5898_03115) - 608697..610523 (-) 1827 WP_002869330.1 motility associated factor glycosyltransferase family protein -
  N5898_RS03120 (N5898_03120) - 610535..611785 (-) 1251 WP_071609577.1 DUF2920 family protein -
  N5898_RS03125 (N5898_03125) ctsG 611785..612300 (-) 516 WP_002869328.1 type II secretion system protein Machinery gene
  N5898_RS03130 (N5898_03130) tsaD 612301..613308 (-) 1008 WP_002869327.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  N5898_RS03135 (N5898_03135) - 613305..614699 (-) 1395 WP_002869326.1 M99 family carboxypeptidase catalytic domain-containing protein -
  N5898_RS03140 (N5898_03140) dxr 614701..615771 (-) 1071 WP_002869325.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  N5898_RS03145 (N5898_03145) cdsA 615768..616493 (-) 726 WP_002869324.1 phosphatidate cytidylyltransferase -
  N5898_RS03150 (N5898_03150) - 616502..616840 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18747.67 Da        Isoelectric Point: 8.4866

>NTDB_id=738778 N5898_RS03125 WP_002869328.1 611785..612300(-) (ctsG) [Campylobacter jejuni strain PNUSAC004956]
MRKAFTILELVFVIVILGILAAVALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLNSIKTMSNVSGIENIDLSN
FNGTKEVNFRVGDDKKCLKLVFINKVDFILMGISSNEASKNAIINAANQSHEDLENVNFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=738778 N5898_RS03125 WP_002869328.1 611785..612300(-) (ctsG) [Campylobacter jejuni strain PNUSAC004956]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCTGCTGTTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAACTCTATAAAAACAATGAGTAATGTAAGTGGGATTGAAAATATCGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAAAATGCTTAAAACTTGTTTTTATAAATAAAGTAGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAAACTTTACAAGCTCTTCAAGCAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

100

100

1