Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QAY87_RS26370 Genome accession   NZ_CP121766
Coordinates   5609423..5610046 (-) Length   207 a.a.
NCBI ID   WP_003116135.1    Uniprot ID   A0A0H2ZIF6
Organism   Pseudomonas aeruginosa strain 22112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5604423..5615046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS26350 (QAY87_26345) aroB 5605030..5606136 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  QAY87_RS26355 (QAY87_26350) aroK 5606186..5606704 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QAY87_RS26360 (QAY87_26355) pilQ 5606716..5608848 (-) 2133 WP_023435967.1 type 4a pilus secretin PilQ Machinery gene
  QAY87_RS26365 (QAY87_26360) pilP 5608902..5609426 (-) 525 WP_023435968.1 type 4a pilus biogenesis lipoprotein PilP -
  QAY87_RS26370 (QAY87_26365) pilO 5609423..5610046 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  QAY87_RS26375 (QAY87_26370) pilN 5610043..5610639 (-) 597 WP_023435969.1 type 4a pilus biogenesis protein PilN -
  QAY87_RS26380 (QAY87_26375) pilM 5610639..5611703 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QAY87_RS26385 (QAY87_26380) - 5611888..5614359 (+) 2472 WP_023435970.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22958.35 Da        Isoelectric Point: 4.9107

>NTDB_id=738696 QAY87_RS26370 WP_003116135.1 5609423..5610046(-) (pilO) [Pseudomonas aeruginosa strain 22112]
MSLASSLESLRKIDVNDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLRDLQTQLEQQAAQEESLKQQFATKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPASPDNTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=738696 QAY87_RS26370 WP_003116135.1 5609423..5610046(-) (pilO) [Pseudomonas aeruginosa strain 22112]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGACGTAAACGACCTCGATCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTCCGTGACT
TGCAAACACAGCTCGAACAGCAGGCTGCGCAAGAAGAATCGCTCAAGCAGCAATTTGCTACCAAAGCGTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAGGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGTCTGGGCAGCGGCCTGGAGTTCGAGGAGATCAAGCTGCTCC
CTGAAGTCACTCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTTACCCTGCATGACTTCGAGATCAAGCCGGCTTCGCCCGATAACACCTC
GAAGCTGCGCATGAGCATCTTGGCCAAGACCTACCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

45.596

93.237

0.425
  pilO Acinetobacter baumannii D1279779

45.789

91.787

0.42
  comO/pilO Acinetobacter baylyi ADP1

43.617

90.821

0.396