Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OD347_RS17120 Genome accession   NZ_CP107079
Coordinates   3375237..3375926 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LT-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3370237..3380926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS17085 - 3370437..3370919 (-) 483 WP_013353780.1 flagellar protein FlgN -
  OD347_RS17090 flgM 3370934..3371200 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  OD347_RS17095 - 3371270..3371689 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  OD347_RS17100 comFC 3371763..3372452 (-) 690 WP_201261292.1 phosphoribosyltransferase family protein Machinery gene
  OD347_RS17105 - 3372458..3372742 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  OD347_RS17110 - 3372801..3374185 (-) 1385 Protein_3315 DEAD/DEAH box helicase -
  OD347_RS17115 - 3374292..3375140 (-) 849 WP_088613544.1 DegV family protein -
  OD347_RS17120 degU 3375237..3375926 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OD347_RS17125 degS 3376003..3377166 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  OD347_RS17130 - 3377389..3378036 (+) 648 WP_065982455.1 YigZ family protein -
  OD347_RS17135 - 3378041..3379261 (+) 1221 WP_088613546.1 LCP family protein -
  OD347_RS17140 - 3379361..3380437 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=737974 OD347_RS17120 WP_003219701.1 3375237..3375926(-) (degU) [Bacillus velezensis strain LT-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=737974 OD347_RS17120 WP_003219701.1 3375237..3375926(-) (degU) [Bacillus velezensis strain LT-2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGATGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1