Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OD347_RS17100 Genome accession   NZ_CP107079
Coordinates   3371763..3372452 (-) Length   229 a.a.
NCBI ID   WP_201261292.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3366763..3377452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS17065 fliW 3366853..3367284 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  OD347_RS17070 - 3367314..3367883 (-) 570 WP_088613540.1 DUF6470 family protein -
  OD347_RS17075 flgL 3367975..3368892 (-) 918 WP_088613541.1 flagellar hook-associated protein FlgL -
  OD347_RS17080 flgK 3368904..3370421 (-) 1518 WP_088613542.1 flagellar hook-associated protein FlgK -
  OD347_RS17085 - 3370437..3370919 (-) 483 WP_013353780.1 flagellar protein FlgN -
  OD347_RS17090 flgM 3370934..3371200 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  OD347_RS17095 - 3371270..3371689 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  OD347_RS17100 comFC 3371763..3372452 (-) 690 WP_201261292.1 phosphoribosyltransferase family protein Machinery gene
  OD347_RS17105 - 3372458..3372742 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  OD347_RS17110 - 3372801..3374185 (-) 1385 Protein_3315 DEAD/DEAH box helicase -
  OD347_RS17115 - 3374292..3375140 (-) 849 WP_088613544.1 DegV family protein -
  OD347_RS17120 degU 3375237..3375926 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OD347_RS17125 degS 3376003..3377166 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25363.09 Da        Isoelectric Point: 8.2964

>NTDB_id=737973 OD347_RS17100 WP_201261292.1 3371763..3372452(-) (comFC) [Bacillus velezensis strain LT-2]
MNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVVLIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=737973 OD347_RS17100 WP_201261292.1 3371763..3372452(-) (comFC) [Bacillus velezensis strain LT-2]
CTGAATTGTTTATTGTGTGACTCCCCCATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGTAATCAATTTGAAAAAATCGAAGGCCCAGTATGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCAGCGTATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGTCCCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCCGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCGTTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGAAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598