Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OD347_RS14960 Genome accession   NZ_CP107079
Coordinates   2956070..2956714 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus velezensis strain LT-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951070..2961714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS14925 - 2952255..2952686 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  OD347_RS14930 - 2952686..2953027 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  OD347_RS14935 - 2953020..2954501 (+) 1482 WP_088613349.1 Na+/H+ antiporter subunit D -
  OD347_RS14940 - 2954507..2954983 (+) 477 WP_065982196.1 Na+/H+ antiporter subunit E -
  OD347_RS14945 - 2954983..2955267 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  OD347_RS14950 mnhG 2955251..2955625 (+) 375 WP_045509488.1 monovalent cation/H(+) antiporter subunit G -
  OD347_RS14955 - 2955665..2956048 (-) 384 WP_045509485.1 hotdog fold thioesterase -
  OD347_RS14960 comA 2956070..2956714 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  OD347_RS14965 comP 2956795..2959086 (-) 2292 WP_088613350.1 histidine kinase Regulator
  OD347_RS14970 comX 2959098..2959262 (-) 165 WP_007613432.1 competence pheromone ComX -
  OD347_RS14975 - 2959262..2960173 (-) 912 WP_088613883.1 polyprenyl synthetase family protein -
  OD347_RS14980 degQ 2960325..2960465 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  OD347_RS14985 - 2960930..2961271 (+) 342 WP_045509476.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=737968 OD347_RS14960 WP_014472195.1 2956070..2956714(-) (comA) [Bacillus velezensis strain LT-2]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=737968 OD347_RS14960 WP_014472195.1 2956070..2956714(-) (comA) [Bacillus velezensis strain LT-2]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAACCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATTGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86