Detailed information NTG0737917

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: OD347_RS01970
• Genome accession: NZ_CP107079
• Coordinates: 386984..388132 (+)
• Length: 382 a.a.
• NCBI ID: WP_088612148.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LT-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 381984..393132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OD347_RS01950	-	382378..383061 (-)	684	WP_014469746.1	ABC transporter ATP-binding protein	-
OD347_RS01955	-	383076..384515 (-)	1440	WP_088612145.1	ABC transporter permease	-
OD347_RS01960	-	384728..385411 (+)	684	WP_088612146.1	response regulator transcription factor	-
OD347_RS01965	-	385398..386825 (+)	1428	WP_162495005.1	HAMP domain-containing sensor histidine kinase	-
OD347_RS01970	rapC	386984..388132 (+)	1149	WP_088612148.1	tetratricopeptide repeat protein	Regulator
OD347_RS01975	phrC	388116..388235 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
OD347_RS01980	-	388383..388484 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
OD347_RS01985	-	388579..389943 (-)	1365	WP_088612149.1	aspartate kinase	-
OD347_RS01990	ceuB	390357..391310 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
OD347_RS01995	-	391300..392247 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
OD347_RS02000	-	392241..392999 (+)	759	WP_088612150.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45678.05 Da
• Isoelectric Point: 5.2700

>NTDB_id=737917 OD347_RS01970 WP_088612148.1 386984..388132(+) (rapC) [Bacillus velezensis strain LT-2]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
IRTCFRYLEDKNLYADIEDLALEAAKYYYEQKCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=737917 OD347_RS01970 WP_088612148.1 386984..388132(+) (rapC) [Bacillus velezensis strain LT-2]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAC
GAAGCCATACCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGAACATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAAATGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.632	99.476	0.573