Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ODS73_RS07775 Genome accession   NZ_CP107038
Coordinates   1514550..1516511 (-) Length   653 a.a.
NCBI ID   WP_284060511.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509550..1521511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS07750 (ODS73_07740) - 1510271..1511437 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  ODS73_RS07755 (ODS73_07745) - 1511445..1512539 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  ODS73_RS07760 (ODS73_07750) - 1512697..1513419 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein -
  ODS73_RS07765 (ODS73_07755) - 1513606..1514127 (-) 522 Protein_1546 ABC transporter transmembrane domain-containing protein -
  ODS73_RS07770 (ODS73_07760) - 1514145..1514378 (-) 234 WP_000769000.1 hypothetical protein -
  ODS73_RS07775 (ODS73_07765) amiA 1514550..1516511 (-) 1962 WP_284060511.1 peptide ABC transporter substrate-binding protein Regulator
  ODS73_RS07780 (ODS73_07770) - 1516712..1518334 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  ODS73_RS07785 (ODS73_07775) - 1518440..1519885 (+) 1446 WP_000590315.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ODS73_RS07790 (ODS73_07780) - 1519931..1520125 (-) 195 WP_000051195.1 CsbD family protein -
  ODS73_RS07795 (ODS73_07785) - 1520226..1520875 (-) 650 Protein_1552 DUF1803 domain-containing protein -
  ODS73_RS07800 (ODS73_07790) - 1520859..1521371 (-) 513 WP_000892255.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72954.28 Da        Isoelectric Point: 4.7306

>NTDB_id=737555 ODS73_RS07775 WP_284060511.1 1514550..1516511(-) (amiA) [Streptococcus pneumoniae strain BM6001]
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGIN
FADGQDPYYNPEKAKAKFAEGKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAVGLDTYTQMLEEANKEQDPAK
RYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAIEKWLKEKEES
NKKAQEELAKHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=737555 ODS73_RS07775 WP_284060511.1 1514550..1516511(-) (amiA) [Streptococcus pneumoniae strain BM6001]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTTTTGTCCTGGGTACAGGAGTTTTATTGAGCGCGTGTGGAAA
TTCTAGCACTGCATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGCG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAGGATTTTGTGACAGGATTGCAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTATC
AAGGCTCTTGATGATCAAACCGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGACGATGTGAAATTGACCTACTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTATGCCCGTCTCTATCCGAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAGGATGCTACGTCTTATTACTGGAATTTTAACCTAGATAGACAAGCTTATAAATTTACTTCTAAGACGACC
GACATTGAAAAGAAATCAACTCAGGAAGCAGTTCTTAATAAAAACTTCCGTCAAGCTATTAACTTTGCCTATGATCGTAC
CTCCTATGGGGCTCAAACTCAGGGAGAAGACGGAGCGACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAACCTTTGTAA
GTATCAAAGGAAAAGATTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATAATTATGGTAAGGAATGGCAAGGCATCAAC
TTTGCGGATGGTCAAGACCCTTACTACAATCCTGAGAAAGCCAAGGCTAAATTTGCTGAGGGCAAGAAAGAGCTAGAAGC
TAAGGGAGTTCAATTCCCTATTCATTTGGATGCGACAGTTGACCAAGCTTCTAAGAAGGGGATTCAAGAAGTAAGCTCCA
TGAAGCAATCTATTGAAGCAGCTTTAGGTACGGAGAACGTCGTTATTGATATCCAACAGTTATCAACAGAGGACTATGAT
AACTCAAGTTACCTTGCTCAGACTGCTATTCAGAAAGACTACGACCTTTACAATGGTGGTTGGAGTCCTGACTACTTAGA
TCCATCAACCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAATCTTGGACTCGACCCTGGTGAAGCCA
ATGACAAGGCTAAGGCAGTTGGACTTGACACTTATACTCAAATGTTGGAAGAGGCTAATAAGGAGCAAGACCCAGCCAAA
CGTTATGAGAAATATGCTGATATTCAAGCATGGTTGATAGATAGTTCTCTAGCGATTCCAAATGTTTCATTAGGTGGAAC
GCCTAGCTTGAGAAAAACAGTTCCTTTCTCAGCACCTTATTCATTGGCTGGTAATAAAGGGGTTGAATCATATAAATACC
TCAAAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCATAGAAAAATGGTTGAAAGAAAAAGAAGAATCC
AATAAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.469

100

0.568
  amiA3 Streptococcus thermophilus LMG 18311

56.297

100

0.568
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.568