Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   ACRAD_RS09910 Genome accession   NZ_AP019740
Coordinates   2098959..2101400 (-) Length   813 a.a.
NCBI ID   WP_005027085.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2093959..2106400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS09885 (ACRAD_19400) purM 2094286..2095356 (+) 1071 WP_005019280.1 phosphoribosylformylglycinamidine cyclo-ligase -
  ACRAD_RS09890 (ACRAD_19410) purN 2095363..2095995 (+) 633 WP_005019279.1 phosphoribosylglycinamide formyltransferase -
  ACRAD_RS09895 (ACRAD_19420) - 2096055..2096852 (-) 798 WP_005019278.1 alpha/beta fold hydrolase -
  ACRAD_RS09900 (ACRAD_19430) sppA 2096870..2097886 (-) 1017 WP_005019276.1 signal peptide peptidase SppA -
  ACRAD_RS09905 (ACRAD_19440) - 2098016..2098966 (+) 951 WP_005019275.1 lysophospholipid acyltransferase family protein -
  ACRAD_RS09910 (ACRAD_19450) comA/comEC 2098959..2101400 (-) 2442 WP_005027085.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACRAD_RS09915 (ACRAD_19460) lolD 2101485..2102168 (-) 684 WP_005019272.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACRAD_RS09920 (ACRAD_19470) - 2102161..2103396 (-) 1236 WP_005019271.1 lipoprotein-releasing ABC transporter permease subunit -
  ACRAD_RS09925 (ACRAD_19480) - 2103422..2103994 (+) 573 WP_005019270.1 PilZ domain-containing protein -
  ACRAD_RS09930 (ACRAD_19490) - 2104004..2104930 (-) 927 WP_005027088.1 DMT family transporter -
  ACRAD_RS09935 (ACRAD_19500) - 2104927..2105397 (-) 471 WP_005019268.1 YaiI/YqxD family protein -

Sequence


Protein


Download         Length: 813 a.a.        Molecular weight: 92657.76 Da        Isoelectric Point: 8.8063

>NTDB_id=73751 ACRAD_RS09910 WP_005027085.1 2098959..2101400(-) (comA/comEC) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MWKTILLAWIAGISVMGKTFNLPVFLLPGLMIFSVGSGLLYWYQYSKLESHHPIPCLSRAVFILALGILTGTLGYRYADH
ALEQRLDNRETETRNIEAIVYIRHIDERSEKQIRQKVEVLDQKKQPVQWWLTFKNIPEQPIKFELGEYYRIYGEVIPAHG
YAMPGVFDQEKWFIQQNIMASVKIWKIEKLDHEAVYRLGFNQYLNNQQGWINGLLLLMERQRYHFRTFIQNSTLKNKGLI
LALLTGDKSLLSSETEEQFQRLGISHLLAISGPHVLIFAALVSWVLQTLIRLYGPKLYLSLPRPYLLVFPFCFCVLLYSA
FVGFEIPALRTLLITLLGSSLLLLRQKIQALSLLLASASLLLWIDPFSVLSAAFWLSFGACFILLRIYESIDRQPAQPAF
NWKQRVLTAGKLLIESQGKIFIALFPLVLIFFKQVSWIAPLTNILVIPLLGAVVVPLDILAACLSYIISPLGLLLFHCSD
LGLNLGLWILEILDHLFNPQLQGIAFTPLLIVSLSIGLIILYLPRSVIPKAWALLCFVPVFTSRAPDSDFKLTVLDVGQG
QAILLQSSQQKIMLDTGGYYDETKFSIGQQILAPFLFSQGIARLDRVLLTHLDQDHSGALLPLSQKIKIDEVIANTQLPE
TWNIKQSSPCREGQSWSYQNFKVQVLSPGLNTYPSMVEANPNEYSCVLYVQLNQAQPYRNFLIMGDAGWPTEYELMKKYP
ELQVDVLVLGHHGSKHSSAYSFLKYLHPKLAIASAGQNNRYGHPTKEVKVRLKALDIPLLLTAQTGNIEFYQEADEQINY
TLYREQWKWLKIK

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=73751 ACRAD_RS09910 WP_005027085.1 2098959..2101400(-) (comA/comEC) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGTGGAAAACTATTTTATTGGCCTGGATTGCTGGAATCTCGGTCATGGGGAAAACTTTTAACTTACCTGTTTTTCTGTT
ACCTGGACTGATGATCTTCAGCGTAGGTTCAGGGCTATTATATTGGTATCAATATAGTAAGCTGGAGTCGCACCATCCGA
TTCCATGCTTATCTAGAGCAGTTTTTATTCTAGCCTTAGGCATCCTGACAGGCACATTGGGTTATCGCTACGCTGACCAT
GCGCTAGAACAACGTCTAGATAACAGGGAAACAGAAACAAGAAATATTGAGGCAATTGTTTATATCCGACATATTGATGA
GCGTTCTGAGAAGCAGATCAGGCAAAAAGTGGAAGTACTTGACCAGAAAAAACAGCCTGTTCAATGGTGGCTCACATTTA
AAAATATACCTGAGCAACCTATAAAATTTGAGTTAGGAGAATATTACCGGATTTATGGGGAAGTCATACCTGCTCATGGA
TATGCCATGCCGGGAGTATTTGATCAGGAAAAATGGTTTATTCAGCAGAATATCATGGCCAGTGTAAAAATCTGGAAAAT
AGAGAAATTGGACCATGAGGCAGTTTACCGGCTTGGTTTTAATCAATATCTGAATAATCAACAGGGTTGGATCAATGGTC
TTCTATTACTGATGGAGCGGCAGCGCTATCATTTTCGTACTTTTATTCAAAATAGCACACTGAAAAATAAAGGCCTGATT
TTAGCACTTCTTACAGGTGATAAAAGCTTACTTTCCTCTGAAACAGAAGAACAATTTCAGCGGCTGGGAATCAGTCACCT
GCTGGCAATTTCTGGCCCACACGTATTAATTTTCGCAGCTCTGGTCAGCTGGGTATTGCAAACCCTGATACGGCTGTATG
GTCCAAAACTCTATTTAAGCTTGCCTCGCCCTTATCTGCTGGTTTTTCCTTTCTGTTTTTGTGTATTACTTTACAGCGCT
TTTGTCGGTTTCGAGATTCCGGCACTACGAACACTGCTCATTACTCTGCTAGGGAGTAGCCTGCTTTTATTAAGACAAAA
AATCCAGGCATTAAGCTTATTGCTGGCAAGTGCCAGTTTACTATTATGGATAGATCCTTTTAGTGTTCTCTCGGCAGCTT
TCTGGCTTTCTTTCGGGGCCTGTTTTATTCTGTTGCGCATTTATGAAAGTATAGATCGGCAGCCTGCCCAACCGGCTTTT
AACTGGAAGCAAAGAGTTTTAACTGCTGGAAAGTTACTGATTGAATCACAAGGGAAAATTTTTATTGCTCTCTTTCCGTT
AGTACTGATTTTTTTCAAACAGGTAAGCTGGATTGCGCCATTGACCAATATTCTTGTCATTCCATTATTAGGTGCTGTCG
TAGTGCCGCTAGATATACTGGCTGCATGTCTTTCCTATATCATTTCTCCTTTGGGCCTGCTTTTATTTCATTGTAGCGAT
TTAGGCTTGAATTTAGGCTTGTGGATATTAGAAATACTGGACCATCTGTTTAATCCCCAATTACAGGGAATTGCATTTAC
ACCGTTGCTTATTGTGAGCCTCAGTATCGGCCTGATTATTTTATATCTGCCTCGATCTGTTATTCCTAAAGCTTGGGCGC
TGTTATGTTTTGTACCAGTTTTTACGAGTAGGGCACCAGACTCGGATTTTAAGTTAACCGTTTTAGATGTAGGGCAGGGC
CAAGCCATTCTACTTCAGAGTAGTCAGCAAAAAATAATGTTAGATACAGGCGGTTACTATGATGAAACCAAATTCAGTAT
AGGCCAGCAAATTCTTGCACCATTTTTATTTTCCCAAGGGATAGCTCGCTTAGATCGGGTGCTATTAACTCATCTGGATC
AGGATCATAGCGGGGCACTCTTACCATTAAGCCAAAAAATTAAAATCGATGAAGTAATAGCCAATACCCAGTTACCTGAA
ACATGGAATATAAAACAGTCATCACCATGCCGGGAAGGACAAAGCTGGTCTTATCAGAATTTTAAGGTCCAGGTACTATC
ACCTGGCTTAAATACTTACCCATCAATGGTAGAAGCCAATCCGAATGAATATTCATGTGTGTTATATGTGCAATTAAACC
AGGCCCAGCCTTACCGGAATTTCTTGATTATGGGAGATGCTGGCTGGCCAACTGAATATGAACTCATGAAAAAGTATCCC
GAACTTCAAGTCGACGTACTAGTATTGGGTCACCATGGCAGTAAGCACAGTTCTGCTTACAGTTTTCTAAAATATTTGCA
TCCTAAGCTGGCAATTGCCTCAGCAGGACAGAATAACCGTTATGGTCACCCGACCAAAGAAGTTAAGGTACGTCTAAAGG
CACTTGATATTCCACTTCTTTTAACTGCCCAAACCGGTAATATTGAATTTTATCAAGAAGCTGATGAACAAATAAATTAC
ACGCTCTATAGAGAGCAGTGGAAATGGTTAAAGATTAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baylyi ADP1

50

100

0.506

  comA/comEC Acinetobacter baumannii strain A118

50.249

98.893

0.497

  comA/comEC Acinetobacter baumannii D1279779

50.249

98.893

0.497


Multiple sequence alignment