Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OD350_RS22845 Genome accession   NZ_CP107022
Coordinates   5089483..5089932 (-) Length   149 a.a.
NCBI ID   WP_012061234.1    Uniprot ID   A0A0B5QVQ9
Organism   Clostridium beijerinckii strain CloBei18h     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5084483..5094932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD350_RS22825 (OD350_22825) rplI 5086289..5086735 (-) 447 WP_077845050.1 50S ribosomal protein L9 -
  OD350_RS22830 (OD350_22830) - 5086739..5088679 (-) 1941 WP_077845051.1 DHH family phosphoesterase -
  OD350_RS22835 (OD350_22835) - 5088700..5089020 (-) 321 WP_077845052.1 MazG-like family protein -
  OD350_RS22840 (OD350_22840) rpsR 5089198..5089458 (-) 261 WP_012061233.1 30S ribosomal protein S18 -
  OD350_RS22845 (OD350_22845) ssbA 5089483..5089932 (-) 450 WP_012061234.1 single-stranded DNA-binding protein Machinery gene
  OD350_RS22850 (OD350_22850) rpsF 5089946..5090233 (-) 288 WP_012061235.1 30S ribosomal protein S6 -
  OD350_RS22855 (OD350_22855) - 5090335..5090529 (-) 195 WP_012061236.1 DUF951 domain-containing protein -
  OD350_RS22860 (OD350_22860) - 5090529..5091452 (-) 924 WP_077845053.1 mechanosensitive ion channel family protein -
  OD350_RS22865 (OD350_22865) - 5091468..5091710 (-) 243 WP_077845054.1 DUF3343 domain-containing protein -
  OD350_RS22870 (OD350_22870) - 5091879..5092526 (+) 648 WP_077840077.1 LysE family translocator -
  OD350_RS22875 (OD350_22875) - 5092542..5093693 (+) 1152 WP_077845055.1 aminotransferase class V-fold PLP-dependent enzyme -
  OD350_RS22880 (OD350_22880) yyaC 5093860..5094447 (+) 588 WP_077845056.1 spore protease YyaC -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15891.51 Da        Isoelectric Point: 4.5778

>NTDB_id=737418 OD350_RS22845 WP_012061234.1 5089483..5089932(-) (ssbA) [Clostridium beijerinckii strain CloBei18h]
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDKYNTKTGQREADFVPVVVWGKQAESTANYMSKGSQVAISGRIQTRS
YDAKDGTKRYVTEVVADQFGGVEFLGSKGSNSSGNSFGNSNEYSAPANDAFSGGFEEDITPVDDGDMPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=737418 OD350_RS22845 WP_012061234.1 5089483..5089932(-) (ssbA) [Clostridium beijerinckii strain CloBei18h]
ATGAATAAAGTAGTTCTAATCGGAAGATTAACAAAAGATCCAGAACTAAGATTTACTCCAGGAAGTGGAGCAGCAGTAAC
AACCTTAACATTAGCAGTTGATAAATATAATACAAAAACTGGCCAAAGAGAAGCAGATTTTGTTCCTGTAGTAGTATGGG
GCAAACAAGCTGAAAGTACTGCTAATTACATGAGTAAAGGTAGCCAAGTGGCTATTAGTGGTAGAATCCAAACCAGAAGT
TATGATGCGAAAGACGGAACTAAGAGATATGTTACCGAAGTTGTAGCAGATCAATTTGGTGGAGTTGAATTCCTAGGAAG
TAAAGGAAGTAATTCATCAGGAAATAGTTTTGGTAATAGCAATGAATATTCAGCACCAGCGAATGATGCATTCAGTGGTG
GATTTGAAGAGGATATAACTCCGGTAGATGACGGAGATATGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5QVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.143

100

0.483
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.778

72.483

0.383
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.128

0.369