Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QA712_RS09665 Genome accession   NZ_CP121539
Coordinates   1805696..1806508 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain MA5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800696..1811508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS09640 (QA712_09640) ytpR 1800921..1801547 (+) 627 WP_153241700.1 YtpR family tRNA-binding protein -
  QA712_RS09645 (QA712_09645) nox 1801710..1803050 (+) 1341 WP_047205660.1 H2O-forming NADH oxidase -
  QA712_RS09650 (QA712_09650) - 1803140..1803529 (+) 390 WP_372757071.1 single-stranded DNA-binding protein -
  QA712_RS09655 (QA712_09655) groES 1803649..1803933 (+) 285 WP_003131589.1 co-chaperone GroES -
  QA712_RS09660 (QA712_09660) groL 1804021..1805649 (+) 1629 WP_372757073.1 chaperonin GroEL -
  QA712_RS09665 (QA712_09665) vicX 1805696..1806508 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  QA712_RS09670 (QA712_09670) vicK 1806692..1808134 (-) 1443 WP_047205663.1 cell wall metabolism sensor histidine kinase WalK Regulator
  QA712_RS09675 (QA712_09675) yycF 1808127..1808828 (-) 702 WP_003131580.1 response regulator YycF -
  QA712_RS09680 (QA712_09680) tmk 1809006..1809641 (+) 636 WP_015425847.1 dTMP kinase -
  QA712_RS09685 (QA712_09685) - 1809774..1810634 (+) 861 WP_372757075.1 DNA polymerase III subunit delta' -
  QA712_RS09690 (QA712_09690) yaaT 1810686..1811468 (+) 783 WP_372757077.1 regulatory iron-sulfur-containing complex subunit RicT Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=737335 QA712_RS09665 WP_003131583.1 1805696..1806508(-) (vicX) [Lactococcus lactis strain MA5]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=737335 QA712_RS09665 WP_003131583.1 1805696..1806508(-) (vicX) [Lactococcus lactis strain MA5]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCGGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATTCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCCATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGG
GGAACCATTGAAAATGCGGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGAACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GCAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685