Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   QA712_RS06445 Genome accession   NZ_CP121539
Coordinates   1176491..1177156 (+) Length   221 a.a.
NCBI ID   WP_153242129.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171491..1182156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS06410 (QA712_06415) - 1172051..1172608 (-) 558 WP_311920221.1 hypothetical protein -
  QA712_RS06415 (QA712_06420) - 1172614..1172940 (-) 327 WP_311844108.1 lactococcin 972 family bacteriocin -
  QA712_RS06420 (QA712_06425) - 1173260..1173988 (-) 729 WP_311920223.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  QA712_RS06425 (QA712_06430) - 1174181..1174402 (+) 222 WP_010906270.1 YqgQ family protein -
  QA712_RS06430 (QA712_06435) - 1174436..1175407 (+) 972 WP_015427121.1 ROK family glucokinase -
  QA712_RS06435 (QA712_06440) - 1175410..1175796 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  QA712_RS06440 (QA712_06445) - 1175878..1176324 (-) 447 WP_004254538.1 DNA starvation/stationary phase protection protein -
  QA712_RS06445 (QA712_06450) cclA/cilC 1176491..1177156 (+) 666 WP_153242129.1 A24 family peptidase Machinery gene
  QA712_RS06450 (QA712_06455) dinB 1177107..1178201 (-) 1095 WP_012898529.1 DNA polymerase IV -
  QA712_RS06455 (QA712_06460) - 1178279..1178770 (-) 492 WP_017865101.1 prolyl-tRNA synthetase associated domain-containing protein -
  QA712_RS06460 (QA712_06465) - 1178849..1180342 (-) 1494 WP_372756809.1 basic amino acid/polyamine antiporter -
  QA712_RS06465 (QA712_06470) - 1180534..1181664 (-) 1131 WP_014570781.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25636.81 Da        Isoelectric Point: 8.8481

>NTDB_id=737302 QA712_RS06445 WP_153242129.1 1176491..1177156(+) (cclA/cilC) [Lactococcus lactis strain MA5]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILALLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=737302 QA712_RS06445 WP_153242129.1 1176491..1177156(+) (cclA/cilC) [Lactococcus lactis strain MA5]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCATTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGTTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCGCATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCCTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCTCTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362