Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACRAD_RS00945 Genome accession   NZ_AP019740
Coordinates   202070..203485 (-) Length   471 a.a.
NCBI ID   WP_005022966.1    Uniprot ID   A0A062BUE5
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 197070..208485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS00930 (ACRAD_01760) lptG 198123..199193 (+) 1071 WP_005022957.1 LPS export ABC transporter permease LptG -
  ACRAD_RS00935 (ACRAD_01770) gpmI 199312..200862 (+) 1551 WP_005022960.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACRAD_RS00940 (ACRAD_01780) - 200882..202069 (+) 1188 WP_005022963.1 S41 family peptidase -
  ACRAD_RS00945 (ACRAD_01790) pilR 202070..203485 (-) 1416 WP_005022966.1 sigma-54 dependent transcriptional regulator Regulator
  ACRAD_RS00950 (ACRAD_01800) pilS 203510..205075 (-) 1566 WP_005022968.1 PAS domain-containing sensor histidine kinase Regulator
  ACRAD_RS00955 (ACRAD_01810) - 205090..205725 (-) 636 WP_005017150.1 response regulator -
  ACRAD_RS00960 (ACRAD_01820) pbpG 205944..206975 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACRAD_RS00965 (ACRAD_01830) thrC 207063..208208 (-) 1146 WP_005017146.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52984.01 Da        Isoelectric Point: 6.2750

>NTDB_id=73730 ACRAD_RS00945 WP_005022966.1 202070..203485(-) (pilR) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MTNQQALILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLELVHYVSQLYPCTPI
AVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSAQQLVQDALENRMLIGTSLPIQQLKIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPGDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE
IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFRIHVMDIVLPPLREREDDILL
LAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVRELRNIIERAITLSDNEYIDLPQLQSAPLRNVQNFVAGQINHE
PLTDQVIPLSPHRKIPAEGLEQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=73730 ACRAD_RS00945 WP_005022966.1 202070..203485(-) (pilR) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGACAAATCAGCAGGCACTTATATTATTGGTCGATGATGAGGAAGACCTTTGTACTTTAATGCAAATGTCTTTGGCCAA
AATCAATATCAGGACCCACATTGCACATGGACTGGAGCAGGCAAAGAAACTTTTTCAGCAACATGCTTATGATGCCTGCC
TGACTGATCTGAATTTGCCAGATGGCAATGGGCTGGAATTAGTCCATTATGTTTCACAACTTTATCCTTGTACACCGATC
GCCGTTTTGACCGCCTATGGCAATATGGAAATTGCTATTTCAGCACTCAAGGCTGGAGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAGGCCCATCTACAGCAACTGGTTCAAAAAGCACTCAATACGCCTCAATCGGCTCAGCAACTGGTTCAAGATG
CTTTGGAAAATCGGATGTTGATTGGCACTTCTTTGCCAATCCAGCAGCTCAAAATTGCCTTGAAAAAAATTGCCCGCTCA
CAGGCACCGGTTTTTATTACTGGTGAATCCGGTACAGGCAAGGAAGTAGTGGCTAATCTGGTGCATCGCTTAAGTAACCG
CAGTGACGGGCCATTTATTGCTATTAACTGTGGCGCTATTCCAGGCGATCTCATGGAAAGTGAGCTGTTTGGACACAAAA
AGGGAAGTTTTACCGGCGCAAGTCAGGACAAACAGGGACTAATTTATTCTGCCCATGGCGGTAGCTTGTTTCTGGATGAA
ATTGCTGAACTGCCTCTGGCCATGCAGGTTAAATTACTCCGTGCCGTACAGGAAAAGAAAATCCGTCCGATTGGTAGTGA
TCAGGAAATTGATGTGGATTTTCGTGTAATTAGTGCCAGTCATCAGGACCTGGAAATACTAGTACAGCAAGGTAAGTTCC
GGCAGGATCTCTTCTTTCGGATTCATGTCATGGATATTGTTCTGCCCCCCCTGCGTGAACGTGAAGATGACATTCTTCTG
CTGGCTAAACATTTTATTCAGGAAGTATGTAAGGAGTGGGATATTCCCAATAAAATTCTGACCGAGCGCGGCCAGCAATT
TCTGATGCAGCAATATTTTCCGGGGAATGTGCGTGAACTGCGTAATATTATCGAACGTGCGATCACATTAAGTGATAATG
AATATATTGATTTACCCCAACTACAAAGTGCACCTTTGCGCAATGTCCAAAATTTTGTAGCAGGCCAAATTAATCATGAA
CCGCTAACGGACCAAGTCATTCCGTTGAGCCCTCACAGGAAAATTCCTGCCGAAGGCCTGGAGCAATATCTGGAAAATAT
TGAAAAAGAAGTTCTGCTCACTGCACTGAACCAGACACACTGGAACCGGACTTTGGCTGCTAAAAAACTTGGAATGAGTT
TTCGCTCTTTACGTTATCGACTTAAAAAATTTGGGCTGGATACCGATGATGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BUE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.788

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.188

99.575

0.48

Multiple sequence alignment