Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACRAD_RS00950 Genome accession   NZ_AP019740
Coordinates   203510..205075 (-) Length   521 a.a.
NCBI ID   WP_005022968.1    Uniprot ID   A0A062BVU6
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 198510..210075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS00935 (ACRAD_01770) gpmI 199312..200862 (+) 1551 WP_005022960.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACRAD_RS00940 (ACRAD_01780) - 200882..202069 (+) 1188 WP_005022963.1 S41 family peptidase -
  ACRAD_RS00945 (ACRAD_01790) pilR 202070..203485 (-) 1416 WP_005022966.1 sigma-54 dependent transcriptional regulator Regulator
  ACRAD_RS00950 (ACRAD_01800) pilS 203510..205075 (-) 1566 WP_005022968.1 PAS domain-containing sensor histidine kinase Regulator
  ACRAD_RS00955 (ACRAD_01810) - 205090..205725 (-) 636 WP_005017150.1 response regulator -
  ACRAD_RS00960 (ACRAD_01820) pbpG 205944..206975 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACRAD_RS00965 (ACRAD_01830) thrC 207063..208208 (-) 1146 WP_005017146.1 threonine synthase -
  ACRAD_RS00970 (ACRAD_01840) - 208266..209570 (-) 1305 WP_005022971.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59315.15 Da        Isoelectric Point: 5.8116

>NTDB_id=73731 ACRAD_RS00950 WP_005022968.1 203510..205075(-) (pilS) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MAPLRPASLLQTIYRLGEWYSAYRLVLALSLNIIFALTLETVAQDYQHPDLYFYSIVGYALISCIQLIFYKILPFEISKQ
LILLFIVDVCCFSLLNFALGGPNLHLSLLFVVTVFAATILLRPQLALIITLVAVISVIYQQVVGSFFNSSHLNSISNSAL
LAFLFFVMYGIGQIAVQRFRLLENLNFYQSIELNQLQNINRAILEQIEVGYLVLDEQQQVILNNPAACSLLGIPPIFTDE
KYFLRKLQPDLYTLIRFSDLKDGERFLFESQLSPYSVDIQVQKLLVPHQALTLLILQDAQKIKQQVQQLKLMALGQLSAS
IAHEIRNPLAAIVQANELLADSQPEQLQMLTSMIDRQSQRIDKIIHDTLNMARNSPTEPAKIRLSGFLAQVLNEDLIDIK
QAVQLQIEQDIWIYFDELQLRQVLINLIRNALRHNSAEQSFIIIRVHGTEERGWIDVIDFGQGVAERDISQLFKPFFSTE
INGTGLGLYLSHSFCEANHAKLTYVKQQQGACFRIECSIIY

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=73731 ACRAD_RS00950 WP_005022968.1 203510..205075(-) (pilS) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGGCCCCTCTACGCCCCGCCTCACTGCTTCAGACCATCTACCGTCTGGGAGAGTGGTACAGTGCTTATCGTCTTGTTTT
AGCACTTAGTCTTAATATTATTTTTGCACTAACCCTTGAGACTGTTGCTCAAGACTACCAGCATCCTGACCTGTACTTTT
ATAGTATTGTCGGTTATGCCCTGATCAGCTGTATCCAGCTGATTTTTTATAAAATTCTACCTTTTGAAATTTCGAAGCAG
CTTATTTTACTGTTTATAGTAGATGTATGCTGTTTTAGCCTGCTAAATTTTGCACTGGGTGGACCCAATCTGCACTTAAG
TCTACTTTTTGTGGTGACGGTCTTTGCCGCAACAATTTTACTCAGGCCGCAGCTTGCTTTAATTATCACACTGGTTGCTG
TAATTAGTGTGATCTACCAGCAGGTAGTAGGAAGCTTTTTTAACAGCTCCCATCTCAACAGTATCAGTAATAGTGCTTTA
TTAGCTTTTTTATTTTTTGTGATGTATGGCATTGGACAGATTGCTGTACAGCGGTTTCGCCTTTTGGAAAATCTGAATTT
TTATCAGTCTATTGAGCTTAACCAGCTACAGAATATTAACCGGGCTATTTTGGAGCAAATTGAGGTAGGCTATTTAGTTT
TAGATGAGCAGCAGCAGGTGATTTTAAATAATCCGGCAGCCTGTTCATTACTAGGTATTCCACCGATTTTTACTGATGAA
AAGTATTTTCTACGTAAACTCCAGCCAGACCTGTATACGCTTATCCGGTTTAGTGACTTAAAAGATGGTGAAAGATTCTT
GTTTGAATCGCAGCTTTCACCTTACAGTGTCGATATACAGGTTCAGAAACTTCTTGTGCCTCATCAAGCTTTAACCTTGT
TGATATTGCAGGATGCCCAGAAAATCAAGCAGCAGGTACAACAATTAAAACTGATGGCACTGGGACAGCTTTCGGCCAGT
ATTGCCCATGAAATTCGTAATCCTTTGGCAGCTATTGTTCAGGCTAATGAATTATTAGCTGACAGCCAGCCAGAACAGTT
GCAGATGCTCACTAGCATGATTGACCGGCAGTCACAACGTATTGACAAGATTATCCATGATACCTTGAATATGGCACGTA
ACAGTCCGACTGAGCCTGCTAAAATCAGATTATCAGGTTTTCTTGCCCAAGTTTTAAATGAAGACCTGATCGATATAAAA
CAGGCTGTACAGCTACAGATTGAGCAGGATATCTGGATTTATTTTGATGAACTCCAGCTACGTCAAGTGCTTATTAATCT
GATCCGTAATGCATTAAGGCATAATTCAGCAGAGCAGTCTTTTATTATTATACGGGTACATGGCACAGAAGAACGCGGCT
GGATTGATGTCATTGATTTTGGTCAAGGCGTAGCAGAGCGCGATATTTCACAATTGTTTAAACCCTTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTATATTTATCTCACAGTTTTTGTGAGGCTAATCATGCAAAACTTACTTATGTTAAGCA
ACAACAAGGCGCATGTTTTCGAATCGAATGCTCCATTATTTATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BVU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.178

99.04

0.626

Multiple sequence alignment