Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   P7F77_RS08675 Genome accession   NZ_CP121204
Coordinates   1776206..1776808 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain SA0907     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1771206..1781808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F77_RS08655 (P7F77_08660) yajC 1772702..1772962 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  P7F77_RS08660 (P7F77_08665) tgt 1772981..1774120 (-) 1140 WP_031875148.1 tRNA guanosine(34) transglycosylase Tgt -
  P7F77_RS08665 (P7F77_08670) queA 1774143..1775168 (-) 1026 WP_001019163.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  P7F77_RS08670 (P7F77_08675) ruvB 1775170..1776174 (-) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P7F77_RS08675 (P7F77_08680) ruvA 1776206..1776808 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  P7F77_RS08680 (P7F77_08685) - 1776822..1777277 (-) 456 WP_000368902.1 ACT domain-containing protein -
  P7F77_RS08685 (P7F77_08690) obgE 1777290..1778582 (-) 1293 WP_000496108.1 GTPase ObgE -
  P7F77_RS08690 (P7F77_08695) rpmA 1779072..1779356 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  P7F77_RS08695 (P7F77_08700) - 1779368..1779688 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  P7F77_RS08700 (P7F77_08705) rplU 1779694..1780002 (-) 309 WP_223671427.1 50S ribosomal protein L21 -
  P7F77_RS08705 (P7F77_08710) mreD 1780490..1781020 (-) 531 WP_001259927.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=736443 P7F77_RS08675 WP_000271547.1 1776206..1776808(-) (ruvA) [Staphylococcus aureus strain SA0907]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=736443 P7F77_RS08675 WP_000271547.1 1776206..1776808(-) (ruvA) [Staphylococcus aureus strain SA0907]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425