Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P7F77_RS08190 Genome accession   NZ_CP121204
Coordinates   1679564..1680538 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA0907     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674564..1685538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F77_RS08145 (P7F77_08150) - 1674985..1675509 (-) 525 WP_001015120.1 shikimate kinase -
  P7F77_RS08150 (P7F77_08155) - 1675499..1675645 (-) 147 WP_001789879.1 hypothetical protein -
  P7F77_RS08155 (P7F77_08160) comGF 1675742..1676239 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7F77_RS08160 (P7F77_08165) comGE 1676157..1676456 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P7F77_RS08165 (P7F77_08170) comGD 1676443..1676889 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  P7F77_RS08170 (P7F77_08175) comGC 1676867..1677178 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  P7F77_RS08175 (P7F77_08180) - 1677192..1677710 (-) 519 Protein_1607 type II secretion system F family protein -
  P7F77_RS08180 (P7F77_08185) - 1677813..1678985 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  P7F77_RS08185 (P7F77_08190) - 1678999..1679592 (-) 594 Protein_1609 type II secretion system F family protein -
  P7F77_RS08190 (P7F77_08195) comGA 1679564..1680538 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P7F77_RS08195 (P7F77_08200) - 1680590..1681213 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  P7F77_RS08200 (P7F77_08205) - 1681210..1681539 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  P7F77_RS08205 (P7F77_08210) - 1681539..1682525 (-) 987 WP_000161307.1 ROK family glucokinase -
  P7F77_RS08210 (P7F77_08215) - 1682522..1682725 (-) 204 WP_000087561.1 YqgQ family protein -
  P7F77_RS08215 (P7F77_08220) - 1682706..1684169 (-) 1464 WP_001017870.1 rhomboid family intramembrane serine protease -
  P7F77_RS08220 (P7F77_08225) - 1684181..1684720 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  P7F77_RS08225 (P7F77_08230) rpmG 1684929..1685078 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=736435 P7F77_RS08190 WP_000697220.1 1679564..1680538(-) (comGA) [Staphylococcus aureus strain SA0907]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=736435 P7F77_RS08190 WP_000697220.1 1679564..1680538(-) (comGA) [Staphylococcus aureus strain SA0907]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGACTTGATGTATCTACACAACAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTGATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1