Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P7F77_RS08165 Genome accession   NZ_CP121204
Coordinates   1676443..1676889 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA0907     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1671443..1681889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F77_RS08135 (P7F77_08140) gcvPA 1672369..1673715 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  P7F77_RS08140 (P7F77_08145) gcvT 1673735..1674826 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  P7F77_RS08145 (P7F77_08150) - 1674985..1675509 (-) 525 WP_001015120.1 shikimate kinase -
  P7F77_RS08150 (P7F77_08155) - 1675499..1675645 (-) 147 WP_001789879.1 hypothetical protein -
  P7F77_RS08155 (P7F77_08160) comGF 1675742..1676239 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7F77_RS08160 (P7F77_08165) comGE 1676157..1676456 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P7F77_RS08165 (P7F77_08170) comGD 1676443..1676889 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  P7F77_RS08170 (P7F77_08175) comGC 1676867..1677178 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  P7F77_RS08175 (P7F77_08180) - 1677192..1677710 (-) 519 Protein_1607 type II secretion system F family protein -
  P7F77_RS08180 (P7F77_08185) - 1677813..1678985 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  P7F77_RS08185 (P7F77_08190) - 1678999..1679592 (-) 594 Protein_1609 type II secretion system F family protein -
  P7F77_RS08190 (P7F77_08195) comGA 1679564..1680538 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P7F77_RS08195 (P7F77_08200) - 1680590..1681213 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  P7F77_RS08200 (P7F77_08205) - 1681210..1681539 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=736433 P7F77_RS08165 WP_001796473.1 1676443..1676889(-) (comGD) [Staphylococcus aureus strain SA0907]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=736433 P7F77_RS08165 WP_001796473.1 1676443..1676889(-) (comGD) [Staphylococcus aureus strain SA0907]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993