Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   OE105_RS07320 Genome accession   NZ_CP106877
Coordinates   1528831..1529142 (-) Length   103 a.a.
NCBI ID   WP_275419559.1    Uniprot ID   A0A9E8RXR5
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523831..1534142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS07285 (OE105_07285) - 1524292..1525983 (+) 1692 WP_275419552.1 DEAD/DEAH box helicase -
  OE105_RS07290 (OE105_07290) - 1525952..1526752 (+) 801 WP_275419553.1 YqhG family protein -
  OE105_RS07295 (OE105_07295) - 1526986..1527180 (-) 195 WP_275419554.1 YqzE family protein -
  OE105_RS07300 (OE105_07300) comGG 1527264..1527557 (-) 294 WP_275419555.1 competence type IV pilus minor pilin ComGG -
  OE105_RS07305 (OE105_07305) comGF 1527634..1528083 (-) 450 WP_275419556.1 competence type IV pilus minor pilin ComGF -
  OE105_RS07310 (OE105_07310) - 1528055..1528396 (-) 342 WP_275419557.1 hypothetical protein -
  OE105_RS07315 (OE105_07315) comGD 1528374..1528856 (-) 483 WP_275419558.1 competence type IV pilus minor pilin ComGD -
  OE105_RS07320 (OE105_07320) comGC 1528831..1529142 (-) 312 WP_275419559.1 competence type IV pilus major pilin ComGC Machinery gene
  OE105_RS07325 (OE105_07325) comGB 1529158..1530189 (-) 1032 WP_275419560.1 competence type IV pilus assembly protein ComGB -
  OE105_RS07330 (OE105_07330) comGA 1530164..1531294 (-) 1131 WP_420842502.1 competence type IV pilus ATPase ComGA Machinery gene
  OE105_RS07335 (OE105_07335) - 1531461..1532162 (+) 702 WP_275419561.1 helix-turn-helix transcriptional regulator -
  OE105_RS07340 (OE105_07340) - 1532257..1532517 (+) 261 WP_275419562.1 DUF2626 domain-containing protein -
  OE105_RS07345 (OE105_07345) - 1532599..1533696 (-) 1098 WP_275419563.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11608.41 Da        Isoelectric Point: 4.3440

>NTDB_id=736323 OE105_RS07320 WP_275419559.1 1528831..1529142(-) (comGC) [Fervidibacillus halotolerans strain MEBiC13594]
MKNEKGFTLIEMMIVLFVVTILLLITIPNVTKNQKSISEKGCDGMVKMVQAQIQAYYIDKQSFPTSISDLMDEEYLEENP
VCPDGSQIHIKEGSAYVEKNTSD

Nucleotide


Download         Length: 312 bp        

>NTDB_id=736323 OE105_RS07320 WP_275419559.1 1528831..1529142(-) (comGC) [Fervidibacillus halotolerans strain MEBiC13594]
ATGAAAAACGAAAAGGGTTTTACATTAATTGAAATGATGATCGTATTATTTGTTGTGACGATTCTTTTACTCATTACGAT
TCCGAACGTGACGAAAAATCAAAAGAGCATTAGTGAAAAAGGATGTGACGGGATGGTAAAGATGGTTCAAGCACAAATTC
AAGCCTACTATATCGATAAACAGTCTTTTCCTACATCGATATCCGATTTAATGGATGAAGAATATTTAGAAGAAAATCCC
GTTTGTCCGGATGGAAGCCAAATTCATATAAAAGAAGGCAGCGCTTATGTTGAAAAGAATACTTCGGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.083

93.204

0.485
  comGC Staphylococcus aureus MW2

39.583

93.204

0.369
  comGC Staphylococcus aureus N315

39.583

93.204

0.369