Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OE105_RS07330 Genome accession   NZ_CP106877
Coordinates   1530164..1531294 (-) Length   376 a.a.
NCBI ID   WP_420842502.1    Uniprot ID   -
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525164..1536294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS07290 (OE105_07290) - 1525952..1526752 (+) 801 WP_275419553.1 YqhG family protein -
  OE105_RS07295 (OE105_07295) - 1526986..1527180 (-) 195 WP_275419554.1 YqzE family protein -
  OE105_RS07300 (OE105_07300) comGG 1527264..1527557 (-) 294 WP_275419555.1 competence type IV pilus minor pilin ComGG -
  OE105_RS07305 (OE105_07305) comGF 1527634..1528083 (-) 450 WP_275419556.1 competence type IV pilus minor pilin ComGF -
  OE105_RS07310 (OE105_07310) - 1528055..1528396 (-) 342 WP_275419557.1 hypothetical protein -
  OE105_RS07315 (OE105_07315) comGD 1528374..1528856 (-) 483 WP_275419558.1 competence type IV pilus minor pilin ComGD -
  OE105_RS07320 (OE105_07320) comGC 1528831..1529142 (-) 312 WP_275419559.1 competence type IV pilus major pilin ComGC Machinery gene
  OE105_RS07325 (OE105_07325) comGB 1529158..1530189 (-) 1032 WP_275419560.1 competence type IV pilus assembly protein ComGB -
  OE105_RS07330 (OE105_07330) comGA 1530164..1531294 (-) 1131 WP_420842502.1 competence type IV pilus ATPase ComGA Machinery gene
  OE105_RS07335 (OE105_07335) - 1531461..1532162 (+) 702 WP_275419561.1 helix-turn-helix transcriptional regulator -
  OE105_RS07340 (OE105_07340) - 1532257..1532517 (+) 261 WP_275419562.1 DUF2626 domain-containing protein -
  OE105_RS07345 (OE105_07345) - 1532599..1533696 (-) 1098 WP_275419563.1 class I SAM-dependent methyltransferase -
  OE105_RS07350 (OE105_07350) - 1533738..1534364 (-) 627 WP_275419564.1 MBL fold metallo-hydrolase -
  OE105_RS07355 (OE105_07355) - 1534507..1534677 (+) 171 WP_275419565.1 DUF2759 domain-containing protein -
  OE105_RS07360 (OE105_07360) - 1534722..1535855 (-) 1134 WP_275419566.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42329.42 Da        Isoelectric Point: 9.6942

>NTDB_id=736324 OE105_RS07330 WP_420842502.1 1530164..1531294(-) (comGA) [Fervidibacillus halotolerans strain MEBiC13594]
MCRIYVLIKMKGAMSIETMSVEKKVETMIFQAYSLHASDIHILPKSDHFMILFRISNQLFPQYQLNPSEAEKLLSHLKFQ
AKMDIGERRRPQNGSFSVKLGEKRIGLRLSTLPSTFAESMVIRIIPHEDAIPLNRLSLFPKSAHFLLSLLTVSHGLIIFT
GPTGSGKTSTLYTLLRHSSKSLGRNVITLEDPVEKNSDDLLQVQVNEKAGITYASGLKAILRHDPDIIMVGEIRDGITAK
TAVRAALTGHLVLTTMHTKNAKGALYRLMEFGVQWNEMDQTIIAVTAQRLVQIICPLCGDDCSPFCERKSKNRAAVYEVL
YGKALKEALQEIKGGKMETDYPTLKKVISKGIAFGFIQKTEYERWVHDFGERKVEY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=736324 OE105_RS07330 WP_420842502.1 1530164..1531294(-) (comGA) [Fervidibacillus halotolerans strain MEBiC13594]
TTGTGTCGAATATATGTATTAATCAAAATGAAAGGAGCGATGTCCATCGAAACGATGTCCGTTGAAAAAAAGGTTGAAAC
GATGATTTTTCAGGCTTATTCCTTGCACGCTTCCGATATTCATATATTACCTAAATCCGATCATTTTATGATTTTATTCA
GAATTTCCAATCAACTGTTTCCCCAATATCAATTAAATCCCTCTGAGGCAGAAAAACTCCTTTCCCATTTAAAATTTCAG
GCAAAAATGGATATCGGGGAAAGACGAAGACCGCAAAATGGTTCCTTTTCCGTAAAACTAGGGGAAAAACGAATAGGTTT
ACGTTTATCCACCCTTCCCTCGACCTTTGCCGAAAGCATGGTGATCCGAATTATTCCCCATGAAGATGCCATTCCATTAA
ACCGATTATCCCTATTCCCAAAATCAGCACATTTTTTGTTGTCATTATTAACTGTTTCCCACGGTCTAATCATCTTTACA
GGACCGACCGGTTCTGGAAAAACATCGACCCTTTATACATTATTACGTCATTCATCCAAATCATTAGGTCGAAACGTCAT
TACGTTAGAAGATCCTGTGGAAAAAAATAGTGATGATCTTCTCCAAGTTCAAGTAAATGAAAAGGCTGGAATTACGTATG
CGTCAGGATTGAAGGCGATTTTACGGCATGATCCCGACATTATTATGGTCGGCGAAATTCGGGATGGAATAACGGCTAAA
ACAGCTGTACGAGCTGCCCTTACCGGTCATTTAGTATTAACGACGATGCATACGAAAAATGCGAAGGGTGCCCTATACCG
GTTAATGGAGTTCGGTGTCCAATGGAATGAAATGGATCAAACGATCATTGCTGTTACAGCACAAAGGCTCGTACAAATCA
TTTGTCCCTTATGTGGGGATGATTGTTCTCCCTTTTGTGAGCGGAAGTCGAAAAATCGGGCTGCAGTTTACGAAGTTTTG
TATGGGAAAGCATTGAAGGAAGCGCTCCAAGAAATAAAAGGAGGAAAAATGGAAACGGATTATCCCACATTAAAGAAGGT
CATCAGTAAAGGGATTGCATTCGGATTTATTCAAAAAACGGAATATGAAAGATGGGTGCATGATTTTGGGGAAAGAAAAG
TGGAGTATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(28-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.286

93.085

0.505