Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   P8R98_RS03050 Genome accession   NZ_CP121159
Coordinates   582520..583029 (+) Length   169 a.a.
NCBI ID   WP_000392202.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 577520..588029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS03025 - 577539..578408 (+) 870 WP_000858924.1 5'-nucleotidase, lipoprotein e(P4) family -
  P8R98_RS03030 - 578543..579739 (+) 1197 WP_001096753.1 phosphoglycerate kinase -
  P8R98_RS03035 - 580002..580541 (+) 540 WP_000854121.1 aromatic acid exporter family protein -
  P8R98_RS03040 - 580621..580992 (+) 372 WP_000664338.1 MerR family transcriptional regulator -
  P8R98_RS03045 glnA 581026..582372 (+) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  P8R98_RS03050 lytF 582520..583029 (+) 510 WP_000392202.1 CHAP domain-containing protein Regulator
  P8R98_RS03055 - 583191..584870 (-) 1680 WP_000065491.1 ribonuclease J -
  P8R98_RS03060 - 584924..585154 (-) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  P8R98_RS03065 tsaB 585333..586025 (+) 693 WP_000978603.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  P8R98_RS03070 rimI 586027..586434 (+) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  P8R98_RS03075 tsaD 586510..587520 (+) 1011 WP_000655091.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18332.26 Da        Isoelectric Point: 4.4055

>NTDB_id=736105 P8R98_RS03050 WP_000392202.1 582520..583029(+) (lytF) [Streptococcus agalactiae strain S1]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=736105 P8R98_RS03050 WP_000392202.1 582520..583029(+) (lytF) [Streptococcus agalactiae strain S1]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTATCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCTGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTCAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414