Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OCL40_RS02350 Genome accession   NZ_CP106803
Coordinates   453836..454444 (+) Length   202 a.a.
NCBI ID   WP_215318018.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10819     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448836..459444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL40_RS02325 (OCL40_02325) - 449132..449713 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL40_RS02330 (OCL40_02330) dnaB 449876..451282 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL40_RS02335 (OCL40_02335) pilH 451590..452255 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL40_RS02340 (OCL40_02340) pilI 452284..452892 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Machinery gene
  OCL40_RS02345 (OCL40_02345) pilJ 452889..453857 (+) 969 WP_263055816.1 PilW family protein Machinery gene
  OCL40_RS02350 (OCL40_02350) pilK 453836..454444 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL40_RS02355 (OCL40_02355) pilL 454446..454919 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL40_RS02360 (OCL40_02360) - 455531..455976 (-) 446 Protein_459 AzlC family ABC transporter permease -
  OCL40_RS02365 (OCL40_02365) dut 456142..456594 (+) 453 WP_260236890.1 dUTP diphosphatase -
  OCL40_RS02370 (OCL40_02370) dapC 456672..457859 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -
  OCL40_RS02375 (OCL40_02375) yaaA 458170..458949 (+) 780 WP_260236892.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21884.77 Da        Isoelectric Point: 8.4516

>NTDB_id=735373 OCL40_RS02350 WP_215318018.1 453836..454444(+) (pilK) [Neisseria gonorrhoeae strain 10819]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCGKGLCTAVNVRTNNANEESFGNIVVQSTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=735373 OCL40_RS02350 WP_215318018.1 453836..454444(+) (pilK) [Neisseria gonorrhoeae strain 10819]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAAGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

94.581

100

0.95