Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   OCL40_RS02345 Genome accession   NZ_CP106803
Coordinates   452889..453857 (+) Length   322 a.a.
NCBI ID   WP_263055816.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10819     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447889..458857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL40_RS02320 (OCL40_02320) - 448393..448902 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OCL40_RS02325 (OCL40_02325) - 449132..449713 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL40_RS02330 (OCL40_02330) dnaB 449876..451282 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL40_RS02335 (OCL40_02335) pilH 451590..452255 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL40_RS02340 (OCL40_02340) pilI 452284..452892 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Machinery gene
  OCL40_RS02345 (OCL40_02345) pilJ 452889..453857 (+) 969 WP_263055816.1 PilW family protein Machinery gene
  OCL40_RS02350 (OCL40_02350) pilK 453836..454444 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL40_RS02355 (OCL40_02355) pilL 454446..454919 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL40_RS02360 (OCL40_02360) - 455531..455976 (-) 446 Protein_459 AzlC family ABC transporter permease -
  OCL40_RS02365 (OCL40_02365) dut 456142..456594 (+) 453 WP_260236890.1 dUTP diphosphatase -
  OCL40_RS02370 (OCL40_02370) dapC 456672..457859 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35320.27 Da        Isoelectric Point: 9.1851

>NTDB_id=735372 OCL40_RS02345 WP_263055816.1 452889..453857(+) (pilJ) [Neisseria gonorrhoeae strain 10819]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNVATLIVRDARMAGSFG
CFNMSEHAKDDIVDSSNQTQSNPAKPGAKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFTQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVRYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=735372 OCL40_RS02345 WP_263055816.1 452889..453857(+) (pilJ) [Neisseria gonorrhoeae strain 10819]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGTGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATGCTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCCTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

78.462

100

0.792