Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   P7249_RS18105 Genome accession   NZ_CP120944
Coordinates   3524825..3525301 (-) Length   158 a.a.
NCBI ID   WP_001186738.1    Uniprot ID   B7UP40
Organism   Escherichia coli O157:H7 str. EDL933     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3519825..3530301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7249_RS18055 infA 3519937..3520155 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  P7249_RS18065 - 3520646..3521488 (-) 843 WP_001280481.1 DUF4942 domain-containing protein -
  P7249_RS18070 - 3521573..3521770 (-) 198 WP_000839282.1 DUF957 domain-containing protein -
  P7249_RS18075 - 3521782..3522273 (-) 492 WP_000976853.1 DUF5983 family protein -
  P7249_RS18080 - 3522270..3522440 (-) 171 Protein_3549 TA system toxin CbtA family protein -
  P7249_RS18085 - 3522488..3523701 (+) 1214 WP_187415336.1 IS3 family transposase -
  P7249_RS18090 - 3523742..3523957 (-) 216 Protein_3551 TA system toxin CbtA family protein -
  P7249_RS18095 - 3524004..3524378 (-) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  P7249_RS18100 - 3524541..3524762 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  P7249_RS18105 radC 3524825..3525301 (-) 477 WP_001186738.1 RadC family protein Machinery gene
  P7249_RS18110 - 3525317..3525802 (-) 486 WP_000214398.1 antirestriction protein -
  P7249_RS18115 - 3525893..3526711 (-) 819 WP_001234682.1 DUF932 domain-containing protein -
  P7249_RS18120 - 3527051..3528121 (-) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  P7249_RS18125 - 3528118..3529023 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.28 Da        Isoelectric Point: 6.9242

>NTDB_id=735371 P7249_RS18105 WP_001186738.1 3524825..3525301(-) (radC) [Escherichia coli O157:H7 str. EDL933]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=735371 P7249_RS18105 WP_001186738.1 3524825..3525301(-) (radC) [Escherichia coli O157:H7 str. EDL933]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UP40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392