Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLUC7005_RS10760 Genome accession   NZ_CP120933
Coordinates   2146742..2147173 (-) Length   143 a.a.
NCBI ID   WP_014570794.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC7005     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2141742..2152173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC7005_RS10720 (LLUC7005_10690) - 2141755..2142621 (+) 867 WP_003129984.1 RluA family pseudouridine synthase -
  LLUC7005_RS10725 (LLUC7005_10695) - 2142660..2143469 (-) 810 WP_014570791.1 metal ABC transporter permease -
  LLUC7005_RS10730 (LLUC7005_10700) - 2143462..2144199 (-) 738 WP_003129989.1 metal ABC transporter ATP-binding protein -
  LLUC7005_RS10735 (LLUC7005_10705) - 2144376..2145218 (-) 843 WP_003129990.1 metal ABC transporter substrate-binding protein -
  LLUC7005_RS10740 (LLUC7005_10710) - 2145215..2145652 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  LLUC7005_RS10745 (LLUC7005_10715) comGG 2145742..2146026 (-) 285 WP_003129993.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLUC7005_RS10750 (LLUC7005_10720) comGF 2146065..2146511 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLUC7005_RS10755 (LLUC7005_10725) comGE 2146474..2146770 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLUC7005_RS10760 (LLUC7005_10730) comGD 2146742..2147173 (-) 432 WP_014570794.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLUC7005_RS10765 (LLUC7005_10735) comGC 2147133..2147402 (-) 270 WP_003129998.1 competence type IV pilus major pilin ComGC Machinery gene
  LLUC7005_RS10770 (LLUC7005_10740) - 2147549..2148073 (-) 525 WP_014570795.1 GNAT family N-acetyltransferase -
  LLUC7005_RS10775 (LLUC7005_10745) - 2148152..2148931 (-) 780 WP_014570796.1 peptidoglycan amidohydrolase family protein -
  LLUC7005_RS10780 (LLUC7005_10750) - 2148931..2149230 (-) 300 WP_014570797.1 phage holin -
  LLUC7005_RS10785 (LLUC7005_10755) - 2149243..2149593 (-) 351 WP_014570798.1 hypothetical protein -
  LLUC7005_RS10790 (LLUC7005_10760) - 2149606..2149842 (-) 237 WP_014570799.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16546.59 Da        Isoelectric Point: 9.6891

>NTDB_id=735313 LLUC7005_RS10760 WP_014570794.1 2146742..2147173(-) (comGD) [Lactococcus lactis subsp. lactis strain UC7005]
MIRTKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQIVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=735313 LLUC7005_RS10760 WP_014570794.1 2146742..2147173(-) (comGD) [Lactococcus lactis subsp. lactis strain UC7005]
ATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAATAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.734

100

0.657
  comGD Streptococcus gordonii str. Challis substr. CH1

39.007

98.601

0.385