Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LLE37_RS05420 Genome accession   NZ_CP106789
Coordinates   1021253..1021864 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10638     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016253..1026864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE37_RS05395 (LLE37_05395) - 1016714..1017295 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE37_RS05400 (LLE37_05400) dnaB 1017459..1018865 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE37_RS05405 (LLE37_05405) pilH 1019019..1019684 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE37_RS05410 (LLE37_05410) pilV 1019716..1020327 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  LLE37_RS05415 (LLE37_05415) pilJ 1020324..1021274 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  LLE37_RS05420 (LLE37_05420) pilK 1021253..1021864 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE37_RS05425 (LLE37_05425) pilL 1021866..1022339 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE37_RS05430 (LLE37_05430) - 1022409..1022717 (-) 309 WP_025456177.1 AzlD family protein -
  LLE37_RS05435 (LLE37_05435) - 1022714..1023424 (-) 711 Protein_1050 AzlC family ABC transporter permease -
  LLE37_RS05440 (LLE37_05440) dut 1023590..1024042 (+) 453 WP_003699637.1 dUTP diphosphatase -
  LLE37_RS05445 (LLE37_05445) dapC 1024118..1025305 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  LLE37_RS05450 (LLE37_05450) yaaA 1025461..1026240 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=735184 LLE37_RS05420 WP_033911077.1 1021253..1021864(+) (pilK) [Neisseria gonorrhoeae strain 10638]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=735184 LLE37_RS05420 WP_033911077.1 1021253..1021864(+) (pilK) [Neisseria gonorrhoeae strain 10638]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956