Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LLE37_RS05405 Genome accession   NZ_CP106789
Coordinates   1019019..1019684 (+) Length   221 a.a.
NCBI ID   WP_003699624.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10638     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1014019..1024684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE37_RS05380 (LLE37_05380) cysT 1014306..1015133 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  LLE37_RS05385 (LLE37_05385) - 1015314..1015646 (+) 333 WP_003687908.1 hypothetical protein -
  LLE37_RS05390 (LLE37_05390) - 1015973..1016482 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LLE37_RS05395 (LLE37_05395) - 1016714..1017295 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE37_RS05400 (LLE37_05400) dnaB 1017459..1018865 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE37_RS05405 (LLE37_05405) pilH 1019019..1019684 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE37_RS05410 (LLE37_05410) pilV 1019716..1020327 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  LLE37_RS05415 (LLE37_05415) pilJ 1020324..1021274 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  LLE37_RS05420 (LLE37_05420) pilK 1021253..1021864 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE37_RS05425 (LLE37_05425) pilL 1021866..1022339 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE37_RS05430 (LLE37_05430) - 1022409..1022717 (-) 309 WP_025456177.1 AzlD family protein -
  LLE37_RS05435 (LLE37_05435) - 1022714..1023424 (-) 711 Protein_1050 AzlC family ABC transporter permease -
  LLE37_RS05440 (LLE37_05440) dut 1023590..1024042 (+) 453 WP_003699637.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24648.03 Da        Isoelectric Point: 8.8981

>NTDB_id=735181 LLE37_RS05405 WP_003699624.1 1019019..1019684(+) (pilH) [Neisseria gonorrhoeae strain 10638]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGNKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=735181 LLE37_RS05405 WP_003699624.1 1019019..1019684(+) (pilH) [Neisseria gonorrhoeae strain 10638]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.045

100

0.9