Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   LLE37_RS05415 Genome accession   NZ_CP106789
Coordinates   1020324..1021274 (+) Length   316 a.a.
NCBI ID   WP_003699627.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10638     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1015324..1026274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE37_RS05390 (LLE37_05390) - 1015973..1016482 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LLE37_RS05395 (LLE37_05395) - 1016714..1017295 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE37_RS05400 (LLE37_05400) dnaB 1017459..1018865 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE37_RS05405 (LLE37_05405) pilH 1019019..1019684 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE37_RS05410 (LLE37_05410) pilV 1019716..1020327 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  LLE37_RS05415 (LLE37_05415) pilJ 1020324..1021274 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  LLE37_RS05420 (LLE37_05420) pilK 1021253..1021864 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE37_RS05425 (LLE37_05425) pilL 1021866..1022339 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE37_RS05430 (LLE37_05430) - 1022409..1022717 (-) 309 WP_025456177.1 AzlD family protein -
  LLE37_RS05435 (LLE37_05435) - 1022714..1023424 (-) 711 Protein_1050 AzlC family ABC transporter permease -
  LLE37_RS05440 (LLE37_05440) dut 1023590..1024042 (+) 453 WP_003699637.1 dUTP diphosphatase -
  LLE37_RS05445 (LLE37_05445) dapC 1024118..1025305 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  LLE37_RS05450 (LLE37_05450) yaaA 1025461..1026240 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34788.50 Da        Isoelectric Point: 9.1777

>NTDB_id=735183 LLE37_RS05415 WP_003699627.1 1020324..1021274(+) (pilJ) [Neisseria gonorrhoeae strain 10638]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 951 bp        

>NTDB_id=735183 LLE37_RS05415 WP_003699627.1 1020324..1021274(+) (pilJ) [Neisseria gonorrhoeae strain 10638]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

93.038

100

0.93