Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FNL60_RS03030 Genome accession   NZ_AP019720
Coordinates   547665..548666 (+) Length   333 a.a.
NCBI ID   WP_002266631.1    Uniprot ID   -
Organism   Streptococcus mutans strain NBRC 13955     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 542665..553666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL60_RS03005 - 542672..543189 (+) 518 Protein_530 hypothetical protein -
  FNL60_RS03010 (SM3g_05280) celB 543205..544563 (+) 1359 WP_002262793.1 PTS cellobiose transporter subunit IIC -
  FNL60_RS03015 (SM3g_05290) - 544829..545599 (+) 771 WP_002268260.1 carbonic anhydrase -
  FNL60_RS03020 (SM3g_05300) - 545726..546307 (+) 582 WP_002262795.1 CDP-archaeol synthase -
  FNL60_RS03025 (SM3g_05310) - 546423..547502 (-) 1080 WP_002280310.1 M24 family metallopeptidase -
  FNL60_RS03030 (SM3g_05320) ccpA 547665..548666 (+) 1002 WP_002266631.1 catabolite control protein A Regulator
  FNL60_RS03035 (SM3g_05330) - 548814..550274 (+) 1461 WP_002278506.1 alpha-amylase -
  FNL60_RS03040 (SM3g_05340) - 550384..551382 (+) 999 WP_002278505.1 glycosyltransferase -
  FNL60_RS03045 (SM3g_05350) - 551384..552718 (+) 1335 WP_002269198.1 glycosyltransferase family 4 protein -
  FNL60_RS03050 (SM3g_05360) - 552797..552988 (+) 192 WP_002266172.1 hypothetical protein -
  FNL60_RS03055 (SM3g_05370) - 552982..553623 (+) 642 WP_002268572.1 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36643.92 Da        Isoelectric Point: 6.8583

>NTDB_id=73518 FNL60_RS03030 WP_002266631.1 547665..548666(+) (ccpA) [Streptococcus mutans strain NBRC 13955]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLFAKQVDGIIFMGHHLTEKIRAEFSRARTPVVLSGTVDLEHQLPS
VNIDHSKAAQDAVALLAKHHDKIAFVSGPLIDDINGKVRLAGYKEGLKKKGLPFKEGLVFEAQYKYQEGYQLAQRVINSG
ATAAYVTEDELAAGLLNGLFAAGKKVPEDFEIITSNDSTIALYTRPNMTSISQPIYDLGAVAMRMLTKIMNKEELEEKEI
VLNHGIRERGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=73518 FNL60_RS03030 WP_002266631.1 547665..548666(+) (ccpA) [Streptococcus mutans strain NBRC 13955]
ATGAACACAGATGACACAATCACTATTTATGATGTTGCCCGTGAAGCGGGAGTGTCCATGGCAACTGTCAGCCGTGTTGT
GAATGGAAATAAAAATGTTAAAGAGAATACCCGCAAAAAAGTCCTAGAAGTCATTGACCGTCTTGATTATCGGCCAAATG
CTGTGGCGCGTGGTTTGGCAAGTAAGAAAACGACTACGGTAGGTGTGGTTATCCCTAACATTGCTAATGCTTATTTTTCT
ATTTTAGCTAAGGGAATTGATGACATTGCAACCATGTATAAATATAATATTGTACTGGCTTCAAGTGATGAAGATGACGA
TAAGGAAGTCAATGTTATCAATACTTTATTTGCTAAACAGGTTGATGGTATTATTTTTATGGGACATCATTTAACTGAAA
AAATTCGCGCTGAATTTTCACGAGCACGGACACCGGTTGTTTTATCAGGTACTGTAGATCTGGAGCATCAACTCCCCAGT
GTTAATATTGATCATAGTAAGGCAGCACAAGATGCCGTAGCTTTATTGGCCAAACATCATGATAAGATTGCTTTTGTATC
GGGTCCCCTTATTGATGATATCAATGGCAAGGTACGTCTGGCTGGTTATAAAGAAGGCCTGAAAAAGAAAGGATTGCCTT
TCAAAGAAGGACTTGTTTTTGAAGCTCAATATAAGTATCAAGAAGGATATCAGTTAGCGCAGCGTGTCATTAATTCAGGC
GCAACAGCTGCTTATGTTACTGAGGATGAGTTGGCTGCTGGGCTGTTAAATGGTTTGTTTGCTGCTGGTAAGAAAGTCCC
AGAAGACTTTGAAATTATCACGAGTAATGATTCTACTATTGCGCTTTATACTCGTCCTAATATGACATCTATCAGTCAGC
CGATTTATGATTTAGGAGCAGTTGCTATGCGCATGTTAACAAAGATTATGAACAAGGAAGAATTGGAAGAAAAAGAAATT
GTTCTTAATCATGGTATCAGAGAAAGAGGAACAACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.679

100

0.787

  ccpA Streptococcus pneumoniae D39

76.276

100

0.763

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556


Multiple sequence alignment