Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE35_RS11910 Genome accession   NZ_CP106773
Coordinates   1938891..1939019 (-) Length   42 a.a.
NCBI ID   WP_263071070.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933891..1944019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS10225 (LLE35_10150) - 1934743..1935027 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  LLE35_RS11900 pilC 1935934..1936218 (-) 285 WP_317629693.1 hypothetical protein Machinery gene
  LLE35_RS11905 pilC 1936224..1936469 (-) 246 WP_317629694.1 hypothetical protein Machinery gene
  LLE35_RS10230 (LLE35_10155) pilC 1936507..1938891 (-) 2385 WP_317629695.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE35_RS11910 pilC 1938891..1939019 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  LLE35_RS10235 (LLE35_10160) - 1939577..1939969 (+) 393 WP_010360973.1 hypothetical protein -
  LLE35_RS10240 (LLE35_10165) gnd 1940049..1941497 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  LLE35_RS10245 (LLE35_10170) waaA 1941560..1942831 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LLE35_RS10250 (LLE35_10175) - 1942872..1943321 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4883.82 Da        Isoelectric Point: 12.9831

>NTDB_id=734860 LLE35_RS11910 WP_263071070.1 1938891..1939019(-) (pilC) [Neisseria gonorrhoeae strain 10562]
MNKTLKRQVFRHTALYAAILMFSHTGGRGGGRRRRKRINTLL

Nucleotide


Download         Length: 129 bp        

>NTDB_id=734860 LLE35_RS11910 WP_263071070.1 1938891..1939019(-) (pilC) [Neisseria gonorrhoeae strain 10562]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

80.556

85.714

0.69