Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE35_RS11900 Genome accession   NZ_CP106773
Coordinates   1935934..1936218 (-) Length   94 a.a.
NCBI ID   WP_317629693.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1930934..1941218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS10220 (LLE35_10145) yccS 1932111..1934261 (+) 2151 WP_003692098.1 YccS family putative transporter -
  LLE35_RS10225 (LLE35_10150) - 1934743..1935027 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  LLE35_RS11900 pilC 1935934..1936218 (-) 285 WP_317629693.1 hypothetical protein Machinery gene
  LLE35_RS11905 pilC 1936224..1936469 (-) 246 WP_317629694.1 hypothetical protein Machinery gene
  LLE35_RS10230 (LLE35_10155) pilC 1936507..1938891 (-) 2385 WP_317629695.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE35_RS11910 pilC 1938891..1939019 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  LLE35_RS10235 (LLE35_10160) - 1939577..1939969 (+) 393 WP_010360973.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10387.85 Da        Isoelectric Point: 8.7152

>NTDB_id=734858 LLE35_RS11900 WP_317629693.1 1935934..1936218(-) (pilC) [Neisseria gonorrhoeae strain 10562]
MEKGGKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGP
MCGIKRLSWREVFF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=734858 LLE35_RS11900 WP_317629693.1 1935934..1936218(-) (pilC) [Neisseria gonorrhoeae strain 10562]
ATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTATCTGGACGAAAA
GAAAACAGACGATTTCCCCGTCACGGCAGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAGGCGTCCCGGCA
AAAACAACCGCTGCTTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCG
ATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

84.043

100

0.84