Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE35_RS10230 Genome accession   NZ_CP106773
Coordinates   1936507..1938891 (-) Length   794 a.a.
NCBI ID   WP_317629695.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931507..1943891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS10220 (LLE35_10145) yccS 1932111..1934261 (+) 2151 WP_003692098.1 YccS family putative transporter -
  LLE35_RS10225 (LLE35_10150) - 1934743..1935027 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  LLE35_RS11900 pilC 1935934..1936218 (-) 285 WP_317629693.1 hypothetical protein Machinery gene
  LLE35_RS11905 pilC 1936224..1936469 (-) 246 WP_317629694.1 hypothetical protein Machinery gene
  LLE35_RS10230 (LLE35_10155) pilC 1936507..1938891 (-) 2385 WP_317629695.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE35_RS11910 pilC 1938891..1939019 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  LLE35_RS10235 (LLE35_10160) - 1939577..1939969 (+) 393 WP_010360973.1 hypothetical protein -
  LLE35_RS10240 (LLE35_10165) gnd 1940049..1941497 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  LLE35_RS10245 (LLE35_10170) waaA 1941560..1942831 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LLE35_RS10250 (LLE35_10175) - 1942872..1943321 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 87632.47 Da        Isoelectric Point: 9.8090

>NTDB_id=734852 LLE35_RS10230 WP_317629695.1 1936507..1938891(-) (pilC) [Neisseria gonorrhoeae strain 10562]
MNAQNQPEVKSNVPYSIKDKDRKRVFDYTSQKSSLGRTNNFISFNNNDEVVARKNGTAVFGTATYLPPYGKVSGFDADAL
KERANAVDWIRTTRPGLAGYAYTDVICRDAGQCPQLVYETKFAFGQQGLQRNGNKLDIYEDKSRDNSPIYKLKDYPWLGV
SFNLGSENTVKNGRSSGRLISSFSENNNNQTIVSTTRDRPISLGDRQREHTAVAYYLNAKLHLLDKKRIKDIAQGKTVDL
GTLRPRVETTGRNWLSYWVTWKIEDKGNITVRLGLPEVKAGRCINKPNPNPKSALSPALTAPALWFGPVQNGKVQMYSAS
VSTYPDSSSSRIFLQELKTQTEPGKPGRYSLKSLNDGEIKSRQPSFNGRQTIIRLDDGVHLIKLNGSKDEVAAFVNLNGN
NTGKNDTFGIVKEANVNLEADEWKKVLLPWTVRGPDNDNKFKSINQKPEKYSQRYRIRDNNGNRDLGDIVNSPIVAVGGY
LATSANDGMVHIFKKTGTDQRGYELKLSYIPGTMPRKDIESNDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQVEDRVFM
FGAMGLGGRGAYALDLSKTNGNYPAAAPLFDVKDGDKKGKNRVEVELGYTVGTPQIGKTQNGTYSAFLASGYAAKQIDDS
TNKTALYVYDLKDTLGTPIAKIEVKDGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSGDNPSKWTVRTIFQGTK
PITSAPAVSRLADKRVVIFGTGSDLSEQDVVDKDQQYIYGIFDDDKGTVKVTVQNGTGGGLLEQALKRKIKHYS

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=734852 LLE35_RS10230 WP_317629695.1 1936507..1938891(-) (pilC) [Neisseria gonorrhoeae strain 10562]
ATGAACGCGCAAAACCAGCCCGAGGTAAAGTCGAATGTGCCATATTCAATAAAGGACAAAGACAGGAAGCGGGTATTTGA
CTATACGAGCCAGAAAAGCAGCTTAGGCAGGACAAACAATTTTATCTCATTCAACAATAACGATGAAGTTGTTGCTCGAA
AAAACGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGCTCTG
AAAGAGCGCGCCAATGCCGTTGATTGGATTCGTACCACCCGGCCCGGGCTGGCAGGCTACGCCTACACCGACGTCATATG
CAGAGACGCAGGGCAATGCCCCCAACTTGTCTATGAGACCAAATTTGCCTTCGGTCAACAAGGGTTGCAAAGAAATGGCA
ACAAGCTGGATATATACGAAGACAAAAGCCGCGACAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTA
TCTTTCAATTTGGGCAGCGAGAATACCGTCAAAAATGGCAGATCATCCGGCAGATTGATATCTTCTTTTAGTGAAAACAA
TAATAATCAAACCATCGTCTCTACGACACGAGACCGCCCTATTTCCCTTGGCGACCGGCAGCGCGAACATACCGCCGTGG
CCTATTATCTGAACGCCAAGCTGCACCTGCTGGACAAAAAAAGGATTAAAGATATCGCCCAAGGCAAAACAGTGGATTTG
GGCACCTTGAGACCGCGCGTCGAGACGACAGGACGAAACTGGCTAAGTTATTGGGTTACGTGGAAGATTGAAGATAAAGG
GAACATTACAGTCCGCCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACAAACCGAACCCCAATCCCAAATCAG
CCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCG
GTTTCTACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGAACCCGGCAAACCCGG
CCGCTATTCCCTCAAATCTTTGAATGATGGTGAGATTAAAAGTCGACAGCCGAGTTTCAACGGGCGGCAAACAATCATCC
GATTGGATGACGGCGTACATTTGATCAAACTGAATGGAAGCAAGGATGAGGTCGCCGCTTTTGTCAATTTAAATGGAAAC
AACACCGGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGAACGTCAATCTTGAAGCTGACGAGTGGAAAAAAGTGCT
GCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAATCAATTAACCAAAAACCAGAAAAATACAGCCAAA
GATACCGCATCCGCGACAACAACGGCAATCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTAT
CTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTGAAGCT
CAGCTACATCCCGGGTACGATGCCGCGCAAGGATATTGAAAGCAACGATTCTACACTCGCCAAAGAGCTGCGCGCCTTTG
CCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGTCAAGTTGAAGACCGCGTGTTTATG
TTCGGCGCGATGGGTTTGGGCGGCAGGGGCGCGTATGCCTTGGATTTAAGCAAAACCAACGGCAATTATCCAGCCGCCGC
TCCCCTGTTTGATGTCAAAGATGGCGATAAGAAAGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGCACGC
CGCAAATCGGCAAAACCCAAAACGGCACATACTCCGCCTTCCTCGCTTCCGGTTATGCGGCTAAACAAATTGACGACTCA
ACAAATAAAACCGCGCTGTATGTGTATGATTTGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGACGG
CAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGG
GCGGCAATATGTACCGCTTTGATTTGAGCGGCGACAATCCGTCCAAATGGACTGTACGCACTATTTTCCAAGGCACAAAA
CCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTGAGTGA
ACAGGATGTAGTCGATAAGGATCAACAATACATTTACGGTATCTTTGACGACGATAAGGGGACGGTTAAGGTAACGGTAC
AAAACGGCACGGGAGGCGGGCTGCTCGAGCAAGCGTTAAAGAGGAAAATAAAACATTATTCCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(466-790)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

70.062

100

0.71