Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P4831_RS11780 Genome accession   NZ_CP120842
Coordinates   2274892..2275308 (-) Length   138 a.a.
NCBI ID   WP_225509978.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZFM559     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2269892..2280308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS11745 - 2270819..2271628 (-) 810 WP_010906310.1 metal ABC transporter permease -
  P4831_RS11750 - 2271621..2272358 (-) 738 WP_277812508.1 metal ABC transporter ATP-binding protein -
  P4831_RS11755 - 2272535..2273377 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  P4831_RS11760 - 2273374..2273811 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  P4831_RS11765 comGG 2273892..2274176 (-) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  P4831_RS11770 comGF 2274215..2274661 (-) 447 WP_031558968.1 competence type IV pilus minor pilin ComGF Machinery gene
  P4831_RS11775 comGE 2274624..2274920 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  P4831_RS11780 comGD 2274892..2275308 (-) 417 WP_225509978.1 competence type IV pilus minor pilin ComGD Machinery gene
  P4831_RS11785 comGC 2275283..2275552 (-) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  P4831_RS11795 - 2275952..2276017 (-) 66 WP_228762923.1 hypothetical protein -
  P4831_RS11800 - 2276385..2277164 (-) 780 WP_058220347.1 peptidoglycan amidohydrolase family protein -
  P4831_RS11805 - 2277164..2277451 (-) 288 WP_023164507.1 phage holin -
  P4831_RS11810 - 2277464..2277814 (-) 351 WP_277812509.1 hypothetical protein -
  P4831_RS11815 - 2277827..2278057 (-) 231 WP_058213223.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15890.64 Da        Isoelectric Point: 7.9826

>NTDB_id=734528 P4831_RS11780 WP_225509978.1 2274892..2275308(-) (comGD) [Lactococcus lactis strain ZFM559]
MKNEILMTKAFTLLESLLVLLITSFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=734528 P4831_RS11780 WP_225509978.1 2274892..2275308(-) (comGD) [Lactococcus lactis strain ZFM559]
ATGAAGAACGAAATTTTAATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTACTTCTTTTATCAC
AACTCTTTTTTCTTTAGAAATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.942

100

0.659
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

94.928

0.384
  comGD Streptococcus mutans UA140

41.406

92.754

0.384
  comGD Streptococcus mutans UA159

41.406

92.754

0.384