Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N8153_RS09295 Genome accession   NZ_CP106756
Coordinates   1942713..1943342 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain B-JRPT-4119     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937713..1948342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8153_RS09275 (N8153_09275) ycbZ 1938114..1939874 (-) 1761 WP_000156526.1 Lon protease family protein -
  N8153_RS09280 (N8153_09280) matP 1940060..1940512 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N8153_RS09285 (N8153_09285) ompA 1940588..1941628 (-) 1041 WP_001400178.1 porin OmpA -
  N8153_RS09290 (N8153_09290) sulA 1941985..1942494 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N8153_RS09295 (N8153_09295) sxy/tfoX 1942713..1943342 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N8153_RS09300 (N8153_09300) yccS 1943305..1945467 (-) 2163 WP_000875061.1 YccS family putative transporter -
  N8153_RS09305 (N8153_09305) yccF 1945477..1945923 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N8153_RS09310 (N8153_09310) helD 1946046..1948100 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=734520 N8153_RS09295 WP_000839153.1 1942713..1943342(+) (sxy/tfoX) [Escherichia coli strain B-JRPT-4119]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=734520 N8153_RS09295 WP_000839153.1 1942713..1943342(+) (sxy/tfoX) [Escherichia coli strain B-JRPT-4119]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1