Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   P4831_RS08675 Genome accession   NZ_CP120842
Coordinates   1716383..1717381 (-) Length   332 a.a.
NCBI ID   WP_277812444.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZFM559     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711383..1722381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS08655 trxA 1711774..1712088 (-) 315 WP_003129442.1 thioredoxin -
  P4831_RS08660 mutS/mutS2 1712185..1714515 (-) 2331 WP_003129443.1 endonuclease MutS2 Machinery gene
  P4831_RS08665 - 1714560..1715120 (-) 561 WP_058220562.1 CvpA family protein -
  P4831_RS08670 - 1715280..1716245 (-) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  P4831_RS08675 ccpA 1716383..1717381 (-) 999 WP_277812444.1 catabolite control protein A Regulator
  P4831_RS08680 - 1717596..1718684 (+) 1089 WP_003129448.1 Xaa-Pro peptidase family protein -
  P4831_RS08685 - 1718996..1721002 (-) 2007 WP_023164400.1 cell division site-positioning protein MapZ family protein -
  P4831_RS08690 - 1721150..1722304 (-) 1155 WP_003129451.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36660.75 Da        Isoelectric Point: 4.8399

>NTDB_id=734497 P4831_RS08675 WP_277812444.1 1716383..1717381(-) (ccpA) [Lactococcus lactis strain ZFM559]
MVESTTTIYDVARVAGVSMATVSRVVNENANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTDRMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=734497 P4831_RS08675 WP_277812444.1 1716383..1717381(-) (ccpA) [Lactococcus lactis strain ZFM559]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGAAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGATCGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

99.398

100

0.994
  ccpA Streptococcus pneumoniae D39

57.1

99.699

0.569
  ccpA Streptococcus gordonii str. Challis substr. CH1

56.798

99.699

0.566