Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   N8I74_RS16140 Genome accession   NZ_CP106753
Coordinates   3476126..3476416 (+) Length   96 a.a.
NCBI ID   WP_263124151.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3471126..3481416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS16105 (N8I74_16105) - 3471149..3471631 (-) 483 WP_263124145.1 glutathione peroxidase -
  N8I74_RS16110 (N8I74_16110) - 3471712..3472167 (+) 456 WP_263124146.1 DUF1841 family protein -
  N8I74_RS16115 (N8I74_16115) - 3472186..3473616 (-) 1431 WP_263124147.1 M48 family metalloprotease -
  N8I74_RS16120 (N8I74_16120) - 3473677..3474066 (-) 390 WP_263126761.1 YqaA family protein -
  N8I74_RS16125 (N8I74_16125) cyaY 3474105..3474416 (-) 312 WP_263124148.1 iron donor protein CyaY -
  N8I74_RS19500 lptM 3474476..3474631 (+) 156 WP_408611826.1 LPS translocon maturation chaperone LptM -
  N8I74_RS16130 (N8I74_16130) - 3474672..3475196 (-) 525 WP_263124149.1 thermonuclease family protein -
  N8I74_RS16135 (N8I74_16135) hpnC 3475193..3476026 (-) 834 WP_263124150.1 squalene synthase HpnC -
  N8I74_RS16140 (N8I74_16140) comE 3476126..3476416 (+) 291 WP_263124151.1 helix-hairpin-helix domain-containing protein Machinery gene
  N8I74_RS16145 (N8I74_16145) - 3476510..3477124 (-) 615 WP_263124152.1 response regulator transcription factor -
  N8I74_RS16150 (N8I74_16150) - 3477121..3479421 (-) 2301 WP_263124154.1 PAS domain-containing sensor histidine kinase -
  N8I74_RS16155 (N8I74_16155) - 3479539..3480219 (-) 681 WP_263124155.1 Bax inhibitor-1/YccA family protein -
  N8I74_RS16160 (N8I74_16160) - 3480293..3481372 (-) 1080 WP_263124157.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 9912.67 Da        Isoelectric Point: 10.6270

>NTDB_id=734483 N8I74_RS16140 WP_263124151.1 3476126..3476416(+) (comE) [Chitiniphilus purpureus strain CD1]
MKQLIMVLLGSMLLAASALAAVDINTATADQLEALPGIGATKAKAIVDYRAKNGPFKSTDELTRVPGIKQGTYAKIKGEL
SVGRAATPAKATTAKK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=734483 N8I74_RS16140 WP_263124151.1 3476126..3476416(+) (comE) [Chitiniphilus purpureus strain CD1]
ATGAAGCAATTGATCATGGTGCTGCTCGGCAGCATGCTGCTGGCAGCTTCCGCCCTGGCGGCGGTCGATATTAACACCGC
CACCGCGGATCAACTGGAGGCACTGCCTGGGATCGGCGCGACCAAGGCCAAGGCCATCGTTGACTACCGCGCCAAGAACG
GTCCGTTCAAAAGCACCGACGAGCTGACCCGCGTGCCGGGGATCAAACAGGGCACCTATGCGAAGATCAAGGGGGAATTG
AGCGTCGGCCGGGCCGCGACCCCCGCCAAAGCCACTACCGCCAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

52.174

95.833

0.5
  comE Neisseria gonorrhoeae MS11

52.174

95.833

0.5
  comE Neisseria gonorrhoeae MS11

52.174

95.833

0.5
  comE Neisseria gonorrhoeae MS11

52.174

95.833

0.5
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.683

85.417

0.365