Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N8I74_RS04140 Genome accession   NZ_CP106753
Coordinates   951604..952959 (+) Length   451 a.a.
NCBI ID   WP_263125664.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 946604..957959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS04115 (N8I74_04115) - 946706..947455 (+) 750 WP_263125659.1 pteridine reductase -
  N8I74_RS04120 (N8I74_04120) ttcA 947705..948643 (+) 939 WP_263125660.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  N8I74_RS04125 (N8I74_04125) - 948670..949428 (+) 759 WP_263125661.1 fused MFS/spermidine synthase -
  N8I74_RS04130 (N8I74_04130) - 949529..950023 (+) 495 WP_263125662.1 RNA pyrophosphohydrolase -
  N8I74_RS04135 (N8I74_04135) - 949992..951620 (+) 1629 WP_263125663.1 PAS domain-containing sensor histidine kinase -
  N8I74_RS04140 (N8I74_04140) pilR 951604..952959 (+) 1356 WP_263125664.1 sigma-54 dependent transcriptional regulator Regulator
  N8I74_RS04145 (N8I74_04145) ampD 953005..953592 (+) 588 WP_263126712.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  N8I74_RS04150 (N8I74_04150) - 953621..955516 (+) 1896 WP_263125665.1 potassium transporter Kup -
  N8I74_RS04155 (N8I74_04155) - 955722..956366 (-) 645 WP_263125666.1 pyrimidine 5'-nucleotidase -
  N8I74_RS04160 (N8I74_04160) - 956429..956866 (-) 438 WP_263125667.1 CBS domain-containing protein -
  N8I74_RS04165 (N8I74_04165) argB 956984..957862 (-) 879 WP_263125668.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49291.45 Da        Isoelectric Point: 5.0162

>NTDB_id=734464 N8I74_RS04140 WP_263125664.1 951604..952959(+) (pilR) [Chitiniphilus purpureus strain CD1]
MARKARNGRRVLVVDDEVDLAELLELTLIKMGLDVDTAHGVAEARAALARTRYDLVLTDMRMPDGEGLEIVEYIERERLD
IPVAVITAYGSMQNAVAALKAGAFDYLAKPLALDQLRTLVKSALNLEEAPAEAGPLPDRPLLGDSPAIRQVLELVEKLAR
SQAPVYITGESGSGKERAARLIHARGSRADKPFVAVNCGAIPENLMESEFFGYRKGAFTGADQDREGFFQAAAGGTLFLD
EVADLPLVMQVKLLRAIQERKVRKVGSTVEEPVDVRLISATHQNLARCVEDGRFRQDLYYRLNVIELKMPPLREMGEDVV
LIARQLLGRLAVQNGQTVPALADDALAALRSYAFPGNVRELENTLERALALSDGSAITAFDLQLSPQRLDDETGGGADCP
LQDHLDRVERAAILDALEKTGGNRTQAAKLLGVTFRSLRYRMDRLGLAGKD

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=734464 N8I74_RS04140 WP_263125664.1 951604..952959(+) (pilR) [Chitiniphilus purpureus strain CD1]
ATGGCGAGAAAGGCTAGGAACGGGCGGCGGGTGCTGGTGGTCGACGACGAGGTCGACCTCGCCGAGCTCTTGGAACTGAC
ACTGATCAAGATGGGGCTGGACGTGGATACCGCGCATGGCGTGGCCGAGGCCCGCGCCGCGCTGGCGCGCACCCGCTACG
ATCTGGTGCTGACCGACATGCGCATGCCCGACGGCGAGGGGCTGGAGATCGTCGAATACATCGAGCGCGAGCGGCTCGAT
ATCCCGGTGGCGGTGATCACCGCCTACGGCAGCATGCAGAATGCGGTGGCCGCACTCAAGGCCGGCGCGTTCGACTACCT
GGCCAAACCGCTTGCGCTCGACCAGCTGCGCACGCTGGTCAAGTCGGCGCTCAACCTGGAGGAGGCGCCTGCCGAGGCGG
GCCCGCTGCCGGATCGGCCGCTGCTGGGCGATTCCCCGGCCATCCGCCAAGTGCTGGAGCTGGTGGAAAAGCTCGCGCGC
AGCCAGGCGCCGGTGTACATCACCGGCGAATCGGGCAGCGGCAAGGAGCGGGCGGCACGGCTGATCCACGCGCGTGGCAG
CCGCGCCGACAAGCCCTTCGTGGCCGTCAACTGCGGTGCGATCCCGGAGAACCTGATGGAAAGCGAGTTCTTCGGCTATC
GCAAGGGCGCCTTCACCGGCGCCGACCAGGATCGCGAGGGCTTCTTCCAGGCGGCGGCCGGCGGCACATTGTTCCTGGAC
GAGGTGGCCGATCTGCCGCTGGTGATGCAGGTGAAGCTGCTGCGGGCGATCCAGGAGCGCAAGGTGCGCAAGGTCGGCAG
CACGGTGGAAGAGCCGGTCGACGTCAGGCTGATCTCGGCCACCCATCAGAATCTGGCGCGCTGTGTCGAGGACGGCCGCT
TCCGGCAGGATCTGTACTATCGCCTGAACGTGATCGAGCTGAAGATGCCGCCGCTGCGCGAGATGGGCGAGGACGTGGTG
CTGATCGCCCGCCAGTTGCTCGGCCGGTTGGCGGTGCAGAACGGCCAGACCGTGCCGGCGCTTGCAGACGACGCGCTGGC
GGCGCTGCGCAGCTACGCGTTTCCCGGCAATGTACGTGAGCTGGAGAACACGCTGGAGCGTGCGCTGGCGCTGTCGGACG
GATCAGCGATCACCGCCTTCGACCTGCAGCTTTCGCCGCAGCGGCTGGACGATGAAACGGGTGGGGGTGCGGATTGTCCG
TTGCAGGACCATCTGGACCGGGTCGAGCGGGCCGCCATCCTCGATGCGCTGGAAAAGACCGGTGGCAACCGCACCCAGGC
GGCCAAGCTGCTGGGGGTGACCTTCCGTTCGCTGCGCTATCGGATGGACCGGCTTGGACTGGCGGGCAAGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory protein, Fis family (HTH_8)

(405-444)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.24

98.004

0.561
  pilR Acinetobacter baumannii strain A118

45.633

100

0.463
  luxO Vibrio cholerae strain A1552

38.444

99.778

0.384