Detailed information NTG0734211

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N7220_RS12100
• Genome accession: NZ_CP106736
• Coordinates: 2618440..2619795 (+)
• Length: 451 a.a.
• NCBI ID: WP_283147775.1
• Uniprot ID: -
• Organism: Silvimonas soli strain 17-6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2613440..2624795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7220_RS12075	sodC	2613554..2614081 (+)	528	WP_283147770.1	superoxide dismutase [Cu-Zn] SodC	-
N7220_RS12080	ttcA	2614268..2615215 (+)	948	WP_283147771.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
N7220_RS12085	-	2615215..2616003 (+)	789	WP_283147772.1	fused MFS/spermidine synthase	-
N7220_RS12090	-	2616172..2616669 (+)	498	WP_283147773.1	RNA pyrophosphohydrolase	-
N7220_RS12095	-	2616870..2618465 (+)	1596	WP_283147774.1	PAS domain-containing sensor histidine kinase	-
N7220_RS12100	pilR	2618440..2619795 (+)	1356	WP_283147775.1	sigma-54 dependent transcriptional regulator	Regulator
N7220_RS12105	-	2620206..2621027 (-)	822	WP_283147776.1	PhzF family phenazine biosynthesis protein	-
N7220_RS12110	ppc	2621135..2623894 (+)	2760	WP_283147777.1	phosphoenolpyruvate carboxylase	-
N7220_RS12115	-	2623939..2624433 (+)	495	WP_283147778.1	hypothetical protein	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49724.84 Da
• Isoelectric Point: 5.1669

>NTDB_id=734211 N7220_RS12100 WP_283147775.1 2618440..2619795(+) (pilR) [Silvimonas soli strain 17-6]
MARKTRTDKRVLVVDDEVDLAELLELTLLKMGLSVDTANSVAEARHCLDRQRYDFCLTDMRMTDGDGLEVIQYIQSKKLD
LPVAVITAYGSTQNAVAALKAGAFDYLAKPVSLEQLRTLIKSALSLDDETDEATTSGQPPRMLLGESPAMKQVLELIDKL
ARSQAPVYVSGESGSGKERAARLIHAQSARVEKPFVAVNCGAIPENLMESEFFGYRKGAFTGADADRDGFFQAAHGGTLF
LDEVADLPLPMQVKLLRAIQERKVRKVGATQEEAVDVRIISATHQNLARCVESGRFRQDLYYRLNVIELHMPPLREMGAD
VELIARNLLVRLAQQSGQTVPTFAPEALTALRHYAFPGNVRELENMLERALALCDGALIVADDLQINPAAESTREGGALD
VTDSLQDYLDRVERAAILDALEKTSGNRTQAAKVLGVTFRSFRYRMERLGI

Nucleotide

• Length: 1356 bp

>NTDB_id=734211 N7220_RS12100 WP_283147775.1 2618440..2619795(+) (pilR) [Silvimonas soli strain 17-6]
ATGGCCAGAAAAACACGAACGGATAAGCGCGTATTGGTGGTCGACGATGAGGTCGACCTGGCCGAGTTGCTGGAGCTGAC
GTTGCTCAAAATGGGCCTGTCGGTCGATACCGCCAACAGTGTGGCCGAGGCTCGGCATTGCCTGGATCGCCAGCGTTACG
ATTTCTGCCTGACCGACATGCGCATGACCGATGGTGACGGGCTGGAAGTCATCCAGTACATCCAGAGTAAAAAGCTGGAT
TTGCCCGTGGCCGTGATTACCGCTTATGGCAGCACCCAGAATGCCGTGGCCGCACTCAAGGCCGGCGCGTTTGATTATTT
GGCCAAGCCGGTGTCGCTGGAGCAACTGCGCACGCTGATCAAATCCGCCCTCAGTCTGGATGACGAAACAGACGAAGCAA
CCACCTCCGGTCAACCGCCGCGCATGCTGTTGGGCGAATCGCCGGCCATGAAACAAGTGCTGGAATTGATCGACAAACTC
GCCCGCAGTCAGGCGCCGGTCTATGTCAGTGGCGAATCGGGTTCGGGCAAGGAGCGTGCGGCGCGGCTGATTCACGCCCA
GTCAGCGCGCGTCGAAAAGCCGTTTGTGGCCGTTAACTGCGGCGCTATCCCCGAAAACCTGATGGAAAGCGAGTTTTTCG
GTTACCGCAAAGGGGCGTTTACCGGCGCCGATGCCGATCGCGACGGTTTTTTCCAGGCCGCACATGGCGGCACATTGTTT
CTGGATGAAGTGGCCGATCTGCCGTTGCCCATGCAGGTCAAACTGCTGCGGGCCATTCAGGAACGCAAAGTACGCAAGGT
TGGCGCCACGCAAGAAGAAGCCGTGGACGTGCGCATTATCAGCGCCACGCATCAAAACCTGGCACGCTGCGTCGAAAGCG
GCCGGTTTCGCCAGGACTTGTACTACCGGCTTAATGTGATTGAACTGCATATGCCGCCATTGCGTGAAATGGGCGCAGAT
GTCGAGCTGATTGCCCGCAATCTGCTTGTCCGACTGGCACAGCAAAGCGGGCAAACTGTTCCGACTTTTGCGCCAGAAGC
GCTCACCGCGCTACGCCACTACGCTTTTCCCGGCAACGTACGTGAGCTGGAAAACATGCTGGAACGGGCGCTGGCGCTGT
GTGACGGCGCGTTGATTGTGGCCGATGATTTGCAGATCAACCCCGCCGCCGAATCAACGCGTGAAGGCGGAGCGCTGGAT
GTAACTGACTCGCTGCAGGACTATCTGGACCGGGTTGAGCGTGCGGCAATTCTGGATGCGCTGGAGAAAACCAGCGGCAA
CCGCACTCAGGCCGCCAAGGTGCTGGGGGTGACTTTCCGGTCGTTCCGCTACCGAATGGAGCGTTTGGGGATTTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (409-448)

• Sigma-54 interaction domain (Sigma54_activat) (143-309)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.652	98.67	0.579
pilR	Acinetobacter baumannii strain A118	45.633	100	0.463
luxO	Vibrio cholerae strain A1552	38.269	97.339	0.373