Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   N7985_RS12315 Genome accession   NZ_CP106673
Coordinates   2407723..2408793 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain SRCM116268     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2402723..2413793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS12270 (N7985_12270) tapA 2403202..2403963 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  N7985_RS12275 (N7985_12275) yqzG 2404235..2404561 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  N7985_RS12280 (N7985_12280) spoIITA 2404603..2404782 (-) 180 WP_003230176.1 YqzE family protein -
  N7985_RS12285 (N7985_12285) comGG 2404853..2405227 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  N7985_RS12290 (N7985_12290) comGF 2405228..2405611 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  N7985_RS12295 (N7985_12295) comGE 2405637..2405984 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  N7985_RS12300 (N7985_12300) comGD 2405968..2406399 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  N7985_RS12305 (N7985_12305) comGC 2406389..2406685 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  N7985_RS12310 (N7985_12310) comGB 2406699..2407736 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  N7985_RS12315 (N7985_12315) comGA 2407723..2408793 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  N7985_RS12320 (N7985_12320) corA 2409204..2410157 (-) 954 WP_029317911.1 magnesium transporter CorA -
  N7985_RS12325 (N7985_12325) yqhB 2410300..2411628 (+) 1329 WP_041850018.1 hemolysin family protein -
  N7985_RS12330 (N7985_12330) rsbRD 2411681..2412517 (-) 837 WP_041850019.1 RsbT co-antagonist protein RsbRD -
  N7985_RS12340 (N7985_12340) mgsR 2412741..2413121 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  N7985_RS12345 (N7985_12345) yqgY 2413353..2413598 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=733976 N7985_RS12315 WP_004399124.1 2407723..2408793(-) (comGA) [Bacillus subtilis strain SRCM116268]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=733976 N7985_RS12315 WP_004399124.1 2407723..2408793(-) (comGA) [Bacillus subtilis strain SRCM116268]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1