Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N7980_RS18990 Genome accession   NZ_CP106671
Coordinates   3672322..3673470 (-) Length   382 a.a.
NCBI ID   WP_043940053.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3667322..3678470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS18960 (N7980_18960) yclO 3668037..3668984 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  N7980_RS18965 (N7980_18965) ceuB 3668977..3669927 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  N7980_RS18970 (N7980_18970) thrD 3670312..3671676 (+) 1365 WP_043940054.1 aspartate kinase -
  N7980_RS18975 (N7980_18975) yczN 3671830..3671943 (+) 114 WP_003234495.1 YjcZ family sporulation protein -
  N7980_RS18980 (N7980_18980) yczM 3672025..3672114 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  N7980_RS18985 (N7980_18985) phrC 3672216..3672338 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  N7980_RS18990 (N7980_18990) rapC 3672322..3673470 (-) 1149 WP_043940053.1 response regulator aspartate phosphatase RapC Regulator
  N7980_RS18995 (N7980_18995) yclK 3673634..3675055 (-) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  N7980_RS19000 (N7980_19000) yclJ 3675042..3675725 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  N7980_RS19005 (N7980_19005) yclI 3675938..3677398 (+) 1461 WP_041850694.1 ABC transporter permease -
  N7980_RS19010 (N7980_19010) yclH 3677414..3678094 (+) 681 WP_041850693.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45709.75 Da        Isoelectric Point: 4.9618

>NTDB_id=733918 N7980_RS18990 WP_043940053.1 3672322..3673470(-) (rapC) [Bacillus subtilis strain SRCM116301]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVFTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=733918 N7980_RS18990 WP_043940053.1 3672322..3673470(-) (rapC) [Bacillus subtilis strain SRCM116301]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTTCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.476

100

0.995
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568