Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N8E87_RS02660 Genome accession   NZ_CP104917
Coordinates   533966..535180 (+) Length   404 a.a.
NCBI ID   WP_264246751.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528966..540180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS02635 (N8E87_02635) manA 529068..530279 (-) 1212 WP_264245805.1 mannose-6-phosphate isomerase, class I -
  N8E87_RS02640 (N8E87_02640) - 530282..530836 (-) 555 WP_115249260.1 YobD family protein -
  N8E87_RS02645 (N8E87_02645) - 530931..531767 (-) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  N8E87_RS02650 (N8E87_02650) - 531781..532584 (-) 804 WP_264245808.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  N8E87_RS02655 (N8E87_02655) manX 532597..533580 (-) 984 WP_264245809.1 PTS mannose transporter subunit IIAB -
  N8E87_RS02660 (N8E87_02660) pilC 533966..535180 (+) 1215 WP_264246751.1 type II secretion system F family protein Machinery gene
  N8E87_RS02665 (N8E87_02665) - 535177..535872 (+) 696 WP_264245811.1 A24 family peptidase -
  N8E87_RS02670 (N8E87_02670) coaE 536016..536516 (+) 501 Protein_508 dephospho-CoA kinase -
  N8E87_RS02675 (N8E87_02675) yacG 536637..536840 (+) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  N8E87_RS02680 (N8E87_02680) - 536851..537117 (+) 267 WP_017807088.1 GNAT family N-acetyltransferase -
  N8E87_RS02685 (N8E87_02685) - 537596..538957 (+) 1362 WP_264245814.1 sodium:alanine symporter family protein -
  N8E87_RS02690 (N8E87_02690) - 539109..539444 (-) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 46394.18 Da        Isoelectric Point: 9.9694

>NTDB_id=733499 N8E87_RS02660 WP_264246751.1 533966..535180(+) (pilC) [Avibacterium paragallinarum strain AP-2]
MKLFKWKAVNQLQQKQQGMIVAKNEDIAKTLLFNRKLQNIKLQRNWQFSRKPKLNELYEFINQLALLLKASLPLKQSLLL
LQRDCTIIQLNIWISEIISALDSGLSFSQSIEKQGKYFSQQELQLLKVGEMTASLPQVCHNIAQYRQRSLKLKRKVQKIL
LYPIVVFCISSILTILLLVFVVPQFAEMYEANHSQLPSFTVFLIALSELLQTYLLHSILLVVLCVIFIRIRLKHSQRLVR
LKNQCIFYSPILGKITKLSRLINFSGTLSLMLYAKVPLNIALQSFLPKQASWQIQKSYVGDQFLNQAIETALYWLNLGYS
LSDSVSSDFFPLEAQQMLKIGEESGQVAQMLQHISEKYQQDLDHQVDLLSQLLEPMLMLIIGGLIGAVLLGMYLPIFNMG
AMIQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=733499 N8E87_RS02660 WP_264246751.1 533966..535180(+) (pilC) [Avibacterium paragallinarum strain AP-2]
ATGAAATTATTTAAATGGAAAGCAGTTAATCAATTGCAACAAAAACAGCAAGGAATGATTGTCGCCAAAAATGAAGATAT
AGCTAAAACGCTCTTATTTAATCGAAAACTACAAAATATTAAGCTACAACGCAACTGGCAATTTTCGCGTAAACCAAAAT
TAAATGAGCTTTATGAATTCATAAATCAATTGGCTTTATTATTGAAAGCGTCTCTTCCGCTTAAACAAAGTTTATTGTTG
TTACAGCGAGATTGTACAATTATTCAGTTAAATATCTGGATTAGTGAAATTATTTCTGCATTAGATAGTGGATTAAGCTT
TTCTCAGTCAATAGAAAAACAAGGTAAATATTTTTCTCAACAAGAGTTGCAACTTTTAAAAGTTGGCGAAATGACGGCAT
CACTTCCTCAAGTTTGCCACAATATTGCACAATACCGACAACGCTCATTAAAGTTGAAAAGAAAAGTCCAGAAAATCTTA
CTTTACCCTATAGTTGTGTTTTGTATTTCTTCAATTTTAACCATTCTTTTATTAGTTTTTGTTGTGCCACAATTTGCTGA
GATGTACGAGGCTAATCATAGCCAGTTGCCTTCTTTTACTGTCTTTTTAATTGCATTATCAGAGTTACTACAAACTTATT
TGCTACACAGTATTTTATTGGTCGTTTTATGTGTTATTTTTATTCGTATACGTTTGAAACATTCTCAGCGTCTTGTGCGA
TTAAAGAACCAGTGTATTTTTTATTCTCCTATATTAGGAAAAATAACAAAACTCTCTCGTCTCATTAATTTTAGCGGGAC
CTTATCTTTAATGTTGTATGCTAAAGTGCCATTAAATATTGCTTTACAGTCTTTTTTACCTAAACAAGCTAGCTGGCAGA
TCCAAAAAAGTTATGTGGGCGATCAATTTTTGAACCAAGCCATAGAAACAGCATTGTATTGGCTTAATTTAGGATATAGC
TTATCTGATAGCGTTTCTAGCGATTTTTTTCCACTTGAAGCTCAGCAAATGTTAAAAATTGGTGAGGAAAGCGGTCAAGT
GGCTCAAATGTTGCAGCATATTTCGGAGAAATATCAACAAGATCTTGATCACCAAGTGGATCTGTTATCCCAATTATTAG
AGCCGATGTTGATGCTAATTATTGGCGGATTGATTGGTGCGGTGCTGCTCGGAATGTACCTCCCTATTTTTAATATGGGA
GCAATGATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-395)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

52.357

99.752

0.522
  pilC Haemophilus influenzae 86-028NP

51.613

99.752

0.515
  pilC Glaesserella parasuis strain SC1401

41.646

99.257

0.413