Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A9CBEGH2_RS07895 | Genome accession | NZ_AP019711 |
| Coordinates | 1546964..1547434 (-) | Length | 156 a.a. |
| NCBI ID | WP_115716659.1 | Uniprot ID | A0A6N4TJ57 |
| Organism | Amedibacterium intestinale strain 9CBEGH2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1541964..1552434
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9CBEGH2_RS07875 (A9CBEGH2_15390) | rplI | 1543305..1543754 (-) | 450 | WP_118276549.1 | 50S ribosomal protein L9 | - |
| A9CBEGH2_RS07880 (A9CBEGH2_15400) | - | 1543732..1545723 (-) | 1992 | WP_163104549.1 | DHH family phosphoesterase | - |
| A9CBEGH2_RS07885 (A9CBEGH2_15410) | - | 1545701..1546636 (-) | 936 | WP_118276551.1 | DUF2232 domain-containing protein | - |
| A9CBEGH2_RS07890 (A9CBEGH2_15420) | rpsR | 1546712..1546942 (-) | 231 | WP_008690406.1 | 30S ribosomal protein S18 | - |
| A9CBEGH2_RS07895 (A9CBEGH2_15430) | ssb | 1546964..1547434 (-) | 471 | WP_115716659.1 | single-stranded DNA-binding protein | Machinery gene |
| A9CBEGH2_RS07900 (A9CBEGH2_15440) | rpsF | 1547456..1547749 (-) | 294 | WP_115716658.1 | 30S ribosomal protein S6 | - |
| A9CBEGH2_RS07905 | - | 1548038..1548538 (+) | 501 | WP_115716657.1 | cytochrome B | - |
| A9CBEGH2_RS07910 (A9CBEGH2_15450) | - | 1548669..1551893 (+) | 3225 | WP_118276552.1 | SNF2 helicase associated domain-containing protein | - |
| A9CBEGH2_RS07915 (A9CBEGH2_15460) | - | 1551949..1552314 (-) | 366 | WP_157964990.1 | sporulation initiation factor Spo0A C-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17179.16 Da Isoelectric Point: 4.6957
>NTDB_id=73344 A9CBEGH2_RS07895 WP_115716659.1 1546964..1547434(-) (ssb) [Amedibacterium intestinale strain 9CBEGH2]
MINRVVLVGRLTKDPVLRKTGSGASVVSFTVACDRRIKTEGQPTADFINCVCWNKVADNTAQYTHKGSLVGVEGRIQTRS
YDDQMGKRVYVTEVVADTVQFLEPKSASSNMTANVYTPDYEPMNQGYQPDMSAQQSYSSDFASSDTLDIASDDLPF
MINRVVLVGRLTKDPVLRKTGSGASVVSFTVACDRRIKTEGQPTADFINCVCWNKVADNTAQYTHKGSLVGVEGRIQTRS
YDDQMGKRVYVTEVVADTVQFLEPKSASSNMTANVYTPDYEPMNQGYQPDMSAQQSYSSDFASSDTLDIASDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=73344 A9CBEGH2_RS07895 WP_115716659.1 1546964..1547434(-) (ssb) [Amedibacterium intestinale strain 9CBEGH2]
ATGATCAATCGTGTAGTATTGGTAGGACGTCTGACAAAAGATCCTGTACTTCGTAAAACAGGTTCTGGTGCCAGTGTAGT
GTCTTTTACTGTTGCGTGTGATCGCAGAATTAAAACAGAAGGACAGCCGACAGCGGATTTTATCAACTGCGTATGCTGGA
ATAAAGTTGCGGATAATACTGCACAATATACACATAAAGGTTCTTTGGTTGGTGTGGAAGGAAGAATCCAGACACGCAGT
TATGATGATCAAATGGGCAAACGTGTGTATGTGACAGAAGTAGTTGCTGATACGGTTCAGTTCTTAGAACCAAAAAGCGC
TTCTAGCAATATGACAGCAAATGTCTACACGCCAGATTATGAGCCGATGAATCAGGGTTATCAGCCGGATATGAGTGCTC
AGCAGTCCTACTCCAGTGATTTTGCGTCAAGTGATACACTTGATATTGCAAGTGATGATTTACCATTTTAA
ATGATCAATCGTGTAGTATTGGTAGGACGTCTGACAAAAGATCCTGTACTTCGTAAAACAGGTTCTGGTGCCAGTGTAGT
GTCTTTTACTGTTGCGTGTGATCGCAGAATTAAAACAGAAGGACAGCCGACAGCGGATTTTATCAACTGCGTATGCTGGA
ATAAAGTTGCGGATAATACTGCACAATATACACATAAAGGTTCTTTGGTTGGTGTGGAAGGAAGAATCCAGACACGCAGT
TATGATGATCAAATGGGCAAACGTGTGTATGTGACAGAAGTAGTTGCTGATACGGTTCAGTTCTTAGAACCAAAAAGCGC
TTCTAGCAATATGACAGCAAATGTCTACACGCCAGATTATGAGCCGATGAATCAGGGTTATCAGCCGGATATGAGTGCTC
AGCAGTCCTACTCCAGTGATTTTGCGTCAAGTGATACACTTGATATTGCAAGTGATGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.512 |
100 |
0.513 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.665 |
100 |
0.506 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |