Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SAP2_RS08960 Genome accession   NZ_AP019698
Coordinates   1876108..1876671 (-) Length   187 a.a.
NCBI ID   WP_031266496.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain P2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1871108..1881671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAP2_RS08930 (SAP2_17870) - 1871589..1871798 (+) 210 WP_002510131.1 TM2 domain-containing protein -
  SAP2_RS08935 (SAP2_17880) - 1872140..1873036 (-) 897 WP_142019740.1 ABC transporter substrate-binding protein -
  SAP2_RS08940 (SAP2_17890) - 1873468..1874964 (+) 1497 WP_142019741.1 glycosyltransferase -
  SAP2_RS08945 (SAP2_17900) - 1875026..1875514 (-) 489 WP_112369408.1 GNAT family N-acetyltransferase -
  SAP2_RS08960 (SAP2_17910) comK/comK1 1876108..1876671 (-) 564 WP_031266496.1 competence protein ComK Regulator
  SAP2_RS08965 (SAP2_17920) - 1876918..1877136 (+) 219 WP_021458870.1 IDEAL domain-containing protein -
  SAP2_RS08970 (SAP2_17930) - 1877213..1878202 (-) 990 WP_002510137.1 lipoate--protein ligase -
  SAP2_RS08975 (SAP2_17940) - 1878399..1878584 (+) 186 WP_142019742.1 YkvS family protein -
  SAP2_RS08980 (SAP2_17950) - 1878589..1879191 (+) 603 WP_142019743.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SAP2_RS08985 (SAP2_17960) dfrG 1879501..1879998 (+) 498 WP_000868795.1 trimethoprim-resistant dihydrofolate reductase DfrG -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22445.95 Da        Isoelectric Point: 9.8214

>NTDB_id=73321 SAP2_RS08960 WP_031266496.1 1876108..1876671(-) (comK/comK1) [Staphylococcus arlettae strain P2]
MFSKYVIKKGDMVIQPIDTKERKYGGTRILKYKQQIEEVKDRTHKIIERSCRFYGSSYHFKKEDTIRITGIISKPPILFT
PLFPTYFFPTHSDRKDENAWINIHYVQHIKRLKDRKCKITFVDEQTLNIDISAHSMRHQYLNAIYYYYMMDRAARIATFD
PDAPIDYTKPQLNIYEALAKYSLFEHK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=73321 SAP2_RS08960 WP_031266496.1 1876108..1876671(-) (comK/comK1) [Staphylococcus arlettae strain P2]
ATATTTAGTAAATATGTCATTAAGAAAGGAGACATGGTGATACAACCCATTGACACTAAAGAAAGAAAATATGGAGGGAC
GCGAATATTAAAATATAAACAACAGATAGAAGAAGTAAAAGATAGAACACACAAAATTATTGAGAGATCATGTCGTTTTT
ATGGCAGTAGCTATCACTTTAAAAAAGAAGATACCATTAGAATTACTGGAATTATCAGTAAACCGCCGATATTATTTACA
CCGCTATTTCCTACTTACTTTTTTCCTACCCATTCTGACAGAAAAGATGAAAATGCTTGGATTAATATTCATTATGTACA
ACATATAAAGAGATTAAAAGACAGAAAATGCAAAATTACTTTTGTTGATGAGCAAACACTCAATATAGATATTTCTGCAC
ATAGTATGAGGCATCAATATTTAAACGCCATTTATTACTATTATATGATGGATAGAGCAGCAAGGATTGCTACTTTTGAT
CCAGATGCACCAATCGATTATACTAAACCGCAATTAAATATTTATGAAGCATTAGCTAAGTACTCATTATTTGAACATAA
ATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

53.968

100

0.545
  comK/comK1 Staphylococcus aureus N315

53.968

100

0.545

Multiple sequence alignment