Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   N6C89_RS00060 Genome accession   NZ_CP104873
Coordinates   12904..13932 (-) Length   342 a.a.
NCBI ID   WP_011973862.1    Uniprot ID   A6UW58
Organism   Methanococcus aeolicus strain PL15/HP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7904..18932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6C89_RS00035 (N6C89_00035) mptA 8347..9276 (+) 930 WP_011973857.1 GTP cyclohydrolase MptA -
  N6C89_RS00040 (N6C89_00040) - 9454..10698 (+) 1245 WP_011973858.1 ATP-grasp domain-containing protein -
  N6C89_RS00045 (N6C89_00045) tfe 10658..11209 (+) 552 WP_011973859.1 transcription factor E -
  N6C89_RS00050 (N6C89_00050) - 11462..11917 (+) 456 WP_232202543.1 TIGR00295 family protein -
  N6C89_RS00055 (N6C89_00055) epdJ 11965..12852 (-) 888 WP_011973861.1 type II secretion system F family protein Machinery gene
  N6C89_RS00060 (N6C89_00060) epdK 12904..13932 (-) 1029 WP_011973862.1 type II secretion system F family protein Machinery gene
  N6C89_RS00065 (N6C89_00065) epdL 13945..15579 (-) 1635 WP_011973863.1 CpaF family protein Machinery gene
  N6C89_RS00070 (N6C89_00070) - 15616..16620 (-) 1005 WP_011973864.1 transcription initiation factor IIB -
  N6C89_RS00075 (N6C89_00075) - 16779..17078 (-) 300 WP_011973865.1 Gar1/Naf1 family protein -
  N6C89_RS00080 (N6C89_00080) - 17643..18698 (+) 1056 WP_011973866.1 radical SAM protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 38074.73 Da        Isoelectric Point: 9.6113

>NTDB_id=733050 N6C89_RS00060 WP_011973862.1 12904..13932(-) (epdK) [Methanococcus aeolicus strain PL15/HP]
MAQAKKDSTLKIFVNNLLYKLGFKKRKSISATSTPIKGIRVLKKLFEEGELEFYESYEDGKIVKNIEEIIPSDSFLSKSS
ESLVETVNKTSFLPSKRDYQYIGVSDLNGYFLKTLIKSFGFGVLFLMIQLVDGDVIYAITQSIVVFLLFLIGGIFYPKIK
LMLFKGEVKLQIMMAMLHMVSMLNSGASLQECIKNIGSNSDYGIVSFEFKNVIYDIVRGGYNFKESLERAKNRTGISLME
KLYAQLITASNQGKGQLLLQNLYGEIIRETMSTLDNSKFQIGNLGNLVFGTGLILPFSGMLQSALTGGGGFDGINNTIDL
VLTKIGPISTIMFAIFVKIKIE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=733050 N6C89_RS00060 WP_011973862.1 12904..13932(-) (epdK) [Methanococcus aeolicus strain PL15/HP]
ATGGCACAAGCTAAAAAAGATAGCACACTTAAAATATTTGTCAATAATTTATTATATAAATTAGGGTTTAAAAAAAGAAA
AAGCATATCTGCCACATCAACACCAATTAAAGGGATTAGGGTATTAAAAAAACTATTCGAAGAAGGTGAATTGGAATTTT
ACGAATCATACGAGGATGGAAAAATTGTAAAAAATATTGAAGAAATAATCCCCTCTGATAGTTTTCTATCAAAATCCTCT
GAATCCTTAGTAGAAACAGTTAATAAAACTTCATTTTTACCATCTAAACGAGATTATCAATATATTGGCGTTAGTGATTT
AAATGGCTATTTTTTAAAAACCCTTATTAAATCCTTTGGTTTTGGCGTATTATTTTTGATGATTCAGTTAGTCGATGGGG
ATGTAATATATGCCATAACTCAAAGTATTGTTGTATTTTTATTATTTTTAATTGGGGGCATATTTTATCCAAAAATAAAA
TTAATGTTATTTAAAGGAGAAGTGAAATTACAAATAATGATGGCAATGTTACATATGGTTTCAATGTTAAACTCTGGTGC
ATCACTTCAAGAATGTATAAAAAATATAGGCTCGAATTCAGATTATGGGATAGTATCTTTTGAGTTTAAAAATGTTATAT
ATGATATTGTGAGAGGAGGATATAATTTTAAAGAATCTCTTGAACGAGCTAAAAATAGGACAGGCATTTCGTTGATGGAA
AAATTATATGCTCAATTAATAACTGCTTCAAATCAAGGTAAAGGTCAATTATTGTTGCAAAATTTATATGGCGAAATTAT
TAGAGAAACCATGTCTACATTAGACAATTCTAAATTTCAAATTGGAAATTTAGGAAACCTCGTATTTGGAACTGGATTAA
TACTACCATTTTCAGGTATGCTTCAATCTGCATTGACCGGGGGAGGGGGTTTTGATGGAATCAATAATACTATTGATTTA
GTTTTAACTAAAATAGGACCAATATCTACAATTATGTTTGCAATATTTGTTAAAATAAAAATAGAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(178-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UW58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

53.185

91.813

0.488